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Rimoc1 RAB7A interacting MON1-CCZ1 complex subunit 1 [ Mus musculus (house mouse) ]

Gene ID: 106064, updated on 4-May-2024

Summary

Official Symbol
Rimoc1provided by MGI
Official Full Name
RAB7A interacting MON1-CCZ1 complex subunit 1provided by MGI
Primary source
MGI:MGI:2146232
See related
Ensembl:ENSMUSG00000041935 AllianceGenome:MGI:2146232
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to be located in cytosol and nucleoplasm. Is expressed in several structures, including adipose tissue; central nervous system; ganglia; gut; and male reproductive gland or organ. Orthologous to human RIMOC1 (RAB7A interacting MON1-CCZ1 complex subunit 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in limb E14.5 (RPKM 24.9), whole brain E14.5 (RPKM 19.1) and 25 other tissues See more
Orthologs
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Genomic context

See Rimoc1 in Genome Data Viewer
Location:
15 A1; 15 1.84 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (4011517..4025228, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (3982035..3995746, complement)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene exportin 4 pseudogene Neighboring gene STARR-seq mESC enhancer starr_37817 Neighboring gene F-box protein 4 Neighboring gene STARR-seq mESC enhancer starr_37819 Neighboring gene predicted gene 2093 Neighboring gene 3-oxoacid CoA transferase 1 antisense RNA Neighboring gene 3-oxoacid CoA transferase 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 
  • Targeted (2) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within autophagy IEA
Inferred from Electronic Annotation
more info
 
involved_in mitophagy ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
RAB7A-interacting MON1-CCZ1 complex subunit 1
Names
UPF0600 protein C5orf51 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_145930.3NP_666042.2  RAB7A-interacting MON1-CCZ1 complex subunit 1

    See identical proteins and their annotated locations for NP_666042.2

    Status: VALIDATED

    Source sequence(s)
    AC137902
    Consensus CDS
    CCDS27360.1
    UniProtKB/Swiss-Prot
    Q8BR90, Q91YM1
    Related
    ENSMUSP00000038476.9, ENSMUST00000046633.10

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    4011517..4025228 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)