Format

Send to:

Choose Destination

ZSCAN1 zinc finger and SCAN domain containing 1 [ Homo sapiens (human) ]

Gene ID: 284312, updated on 5-Jan-2022

Summary

Official Symbol
ZSCAN1provided by HGNC
Official Full Name
zinc finger and SCAN domain containing 1provided by HGNC
Primary source
HGNC:HGNC:23712
See related
Ensembl:ENSG00000152467
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
MZF-1; ZNF915
Summary
Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of chromatin. [provided by Alliance of Genome Resources, Nov 2021]
Expression
Low expression observed in reference dataset See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See ZSCAN1 in Genome Data Viewer
Location:
19q13.43
Exon count:
6
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (58033989..58058907)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (58545393..58565999)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene zinc finger protein 606 Neighboring gene uncharacterized LOC100128398 Neighboring gene vomeronasal 2 receptor 19, pseudogene Neighboring gene leucine zipper and EF-hand containing transmembrane protein 1 pseudogene 2 Neighboring gene HNRNPDL pseudogene 4 Neighboring gene zinc finger protein 135 Neighboring gene RNA, 7SL, cytoplasmic 526, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ33779, MGC104472

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in chromatin ISA
Inferred from Sequence Alignment
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
zinc finger and SCAN domain-containing protein 1
Names
zinc finger with SCAN domain 1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_182572.4NP_872378.3  zinc finger and SCAN domain-containing protein 1

    See identical proteins and their annotated locations for NP_872378.3

    Status: VALIDATED

    Source sequence(s)
    AC008751, AC008969
    Consensus CDS
    CCDS12969.1
    UniProtKB/Swiss-Prot
    Q8NBB4
    Related
    ENSP00000282326.1, ENST00000282326.6
    Conserved Domains (3) summary
    sd00017
    Location:294314
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam02023
    Location:35122
    SCAN; SCAN domain
    pfam13465
    Location:306331
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    58033989..58058907
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017026609.1XP_016882098.1  zinc finger and SCAN domain-containing protein 1 isoform X1

    Conserved Domains (1) summary
    cd07936
    Location:75158
    SCAN; SCAN oligomerization domain
  2. XM_017026610.1XP_016882099.1  zinc finger and SCAN domain-containing protein 1 isoform X2

  3. XM_006723149.2XP_006723212.1  zinc finger and SCAN domain-containing protein 1 isoform X3

    See identical proteins and their annotated locations for XP_006723212.1

    Conserved Domains (3) summary
    sd00017
    Location:334354
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam02023
    Location:75162
    SCAN; SCAN domain
    pfam13465
    Location:346371
    zf-H2C2_2; Zinc-finger double domain
Support Center