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ENDOV endonuclease V [ Homo sapiens (human) ]

Gene ID: 284131, updated on 3-Apr-2024

Summary

Official Symbol
ENDOVprovided by HGNC
Official Full Name
endonuclease Vprovided by HGNC
Primary source
HGNC:HGNC:26640
See related
Ensembl:ENSG00000173818 MIM:619821; AllianceGenome:HGNC:26640
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Enables DNA binding activity; endoribonuclease activity, producing 5'-phosphomonoesters; and single-stranded RNA binding activity. Predicted to be involved in DNA repair. Located in cytoplasmic stress granule and nucleolus. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in testis (RPKM 3.1), prostate (RPKM 2.3) and 25 other tissues See more
Orthologs
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Genomic context

See ENDOV in Genome Data Viewer
Location:
17q25.3
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (80415167..80438086)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (81317021..81339980)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (78388967..78411886)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9102 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9103 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78195951-78196788 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78196789-78197626 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78200105-78200606 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78209849-78210638 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78210639-78211426 Neighboring gene solute carrier family 26 member 11 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:78227308-78228024 Neighboring gene SLC26A11-RNF213 intergenic CAGE-defined mid-level expression enhancer Neighboring gene CRISPRi-validated cis-regulatory element chr17.5742 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9104 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9105 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9106 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:78237270-78237826 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12933 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12934 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9107 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78247837-78248435 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78251821-78252439 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78258533-78259093 Neighboring gene ring finger protein 213 Neighboring gene RNF213 antisense RNA 1 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr17:78345568-78346767 Neighboring gene MPRA-validated peak3024 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78354122-78354622 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr17:78359110-78360309 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78369069-78369570 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78371216-78371723 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78371724-78372230 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12935 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78398753-78399254 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78399255-78399754 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78415272-78415938 Neighboring gene microRNA 4730 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:78419431-78420213 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:78428217-78429046 Neighboring gene Sharpr-MPRA regulatory region 4093 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12936 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78441725-78442449 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78448861-78449394 Neighboring gene Sharpr-MPRA regulatory region 3125 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78467323-78467823 Neighboring gene neuronal pentraxin 1 Neighboring gene Sharpr-MPRA regulatory region 6979 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78500540-78501513 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:78509630-78510257 Neighboring gene ribosomal protein L32 pseudogene 31

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • FLJ35220, MGC74455

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
enables RNA endonuclease activity, producing 5'-phosphomonoesters IBA
Inferred from Biological aspect of Ancestor
more info
 
enables RNA endonuclease activity, producing 5'-phosphomonoesters IDA
Inferred from Direct Assay
more info
PubMed 
NOT enables endodeoxyribonuclease activity, producing 5'-phosphomonoesters IDA
Inferred from Direct Assay
more info
PubMed 
enables endodeoxyribonuclease activity, producing 5'-phosphomonoesters ISS
Inferred from Sequence or Structural Similarity
more info
 
enables magnesium ion binding ISS
Inferred from Sequence or Structural Similarity
more info
 
enables magnesium ion binding TAS
Traceable Author Statement
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables single-stranded RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables single-stranded RNA binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
involved_in DNA repair ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytoplasmic stress granule IEA
Inferred from Electronic Annotation
more info
 
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleolus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
endonuclease V
Names
hEndoV
inosine-specific endoribonuclease
NP_001158109.1
NP_001158110.1
NP_001339689.1
NP_001339690.1
NP_775898.2
XP_005257303.1
XP_006721900.1
XP_011522957.1
XP_011522958.1
XP_011522959.1
XP_011522960.1
XP_011522962.1
XP_011522963.1
XP_011522964.1
XP_011522965.1
XP_011522968.1
XP_011522969.1
XP_011522971.1
XP_011522972.1
XP_011522973.1
XP_016879997.1
XP_016879999.1
XP_016880002.1
XP_047291765.1
XP_047291766.1
XP_047291767.1
XP_047291768.1
XP_047291769.1
XP_047291770.1
XP_047291771.1
XP_047291772.1
XP_047291773.1
XP_054171778.1
XP_054171779.1
XP_054171780.1
XP_054171781.1
XP_054171782.1
XP_054171783.1
XP_054171784.1
XP_054171785.1
XP_054171786.1
XP_054171787.1
XP_054171788.1
XP_054171789.1
XP_054171790.1
XP_054171791.1
XP_054171792.1
XP_054171793.1
XP_054171794.1
XP_054171795.1
XP_054171796.1
XP_054171797.1
XP_054171798.1
XP_054171799.1
XP_054171800.1
XP_054171801.1
XP_054171802.1
XP_054171803.1
XP_054171804.1
XP_054171805.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001164637.3NP_001158109.1  endonuclease V isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC120024, AK092539, AK096344, BM714470, KC877673
    Consensus CDS
    CCDS54173.1
    UniProtKB/Swiss-Prot
    Q8N8Q3
    Related
    ENSP00000431036.1, ENST00000520367.5
    Conserved Domains (1) summary
    cd06559
    Location:17200
    Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
  2. NM_001164638.3NP_001158110.1  endonuclease V isoform 3

    See identical proteins and their annotated locations for NP_001158110.1

    Status: VALIDATED

    Source sequence(s)
    AK092539, BC064545
    Consensus CDS
    CCDS54174.1
    UniProtKB/Swiss-Prot
    Q8N8Q3
    Related
    ENSP00000317810.5, ENST00000323854.9
    Conserved Domains (1) summary
    cd06559
    Location:17200
    Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
  3. NM_001352760.3NP_001339689.1  endonuclease V isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC120024, BU553848
    Conserved Domains (1) summary
    cd06559
    Location:17245
    Endonuclease_V; a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
  4. NM_001352761.3NP_001339690.1  endonuclease V isoform 5

    Status: VALIDATED

    Source sequence(s)
    AC120024
    Conserved Domains (1) summary
    cd06559
    Location:17245
    Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
  5. NM_173627.5NP_775898.2  endonuclease V isoform 1

    See identical proteins and their annotated locations for NP_775898.2

    Status: VALIDATED

    Source sequence(s)
    AC120024, AK096344, BM714470, KC877673
    Consensus CDS
    CCDS54172.1
    UniProtKB/Swiss-Prot
    I3L3S4, Q6P2G2, Q86X99, Q8N8Q3, Q8NAK0
    Related
    ENSP00000429190.1, ENST00000518137.6
    Conserved Domains (1) summary
    cd06559
    Location:17245
    Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases

RNA

  1. NR_148041.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC120024, BM714470, KC877673
  2. NR_148042.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC120024, BM714470, KC877673
  3. NR_148043.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC120024, BM714470, KC877673
  4. NR_148044.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC120024, BM714470, KC877673
    Related
    ENST00000520284.5
  5. NR_148045.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC120024, BM714470, KC877673
    Related
    ENST00000517795.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    80415167..80438086
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011524658.3XP_011522960.1  endonuclease V isoform X5

    Conserved Domains (1) summary
    cd06559
    Location:17258
    Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
  2. XM_011524669.3XP_011522971.1  endonuclease V isoform X13

    Conserved Domains (1) summary
    cd06559
    Location:17256
    Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
  3. XM_011524670.2XP_011522972.1  endonuclease V isoform X16

    Conserved Domains (1) summary
    cd06559
    Location:17249
    Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
  4. XM_011524671.3XP_011522973.1  endonuclease V isoform X19

    Conserved Domains (1) summary
    cd06559
    Location:17238
    Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
  5. XM_011524666.2XP_011522968.1  endonuclease V isoform X12

    See identical proteins and their annotated locations for XP_011522968.1

    Conserved Domains (1) summary
    cd06559
    Location:1175
    Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
  6. XM_047435817.1XP_047291773.1  endonuclease V isoform X21

  7. XM_047435811.1XP_047291767.1  endonuclease V isoform X12

  8. XM_047435812.1XP_047291768.1  endonuclease V isoform X12

  9. XM_017024508.2XP_016879997.1  endonuclease V isoform X12

    Conserved Domains (1) summary
    cd06559
    Location:1175
    Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
  10. XM_047435813.1XP_047291769.1  endonuclease V isoform X12

  11. XM_017024513.2XP_016880002.1  endonuclease V isoform X21

    UniProtKB/TrEMBL
    H0YBZ5
    Related
    ENSP00000430639.1, ENST00000519331.1
    Conserved Domains (1) summary
    cl00653
    Location:153
    Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
  12. XM_011524667.3XP_011522969.1  endonuclease V isoform X12

    See identical proteins and their annotated locations for XP_011522969.1

    Conserved Domains (1) summary
    cd06559
    Location:1175
    Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
  13. XM_011524655.2XP_011522957.1  endonuclease V isoform X1

    Conserved Domains (1) summary
    cd06559
    Location:17258
    Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
  14. XM_011524662.2XP_011522964.1  endonuclease V isoform X9

    Conserved Domains (1) summary
    cd06559
    Location:17256
    Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
  15. XM_011524657.2XP_011522959.1  endonuclease V isoform X3

    Conserved Domains (1) summary
    cd06559
    Location:17247
    Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
  16. XM_006721837.4XP_006721900.1  endonuclease V isoform X11

    Conserved Domains (1) summary
    cd06559
    Location:17245
    Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
  17. XM_011524660.1XP_011522962.1  endonuclease V isoform X7

    Conserved Domains (1) summary
    cd06559
    Location:17213
    Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
  18. XM_011524661.3XP_011522963.1  endonuclease V isoform X8

    Conserved Domains (1) summary
    cd06559
    Location:17202
    Endonuclease_V; a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
  19. XM_005257246.4XP_005257303.1  endonuclease V isoform X17

    Conserved Domains (1) summary
    cd06559
    Location:17200
    Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
  20. XM_011524656.2XP_011522958.1  endonuclease V isoform X2

    Conserved Domains (1) summary
    cd06559
    Location:17258
    Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
  21. XM_011524663.2XP_011522965.1  endonuclease V isoform X10

    Conserved Domains (1) summary
    cd06559
    Location:17256
    Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
  22. XM_047435809.1XP_047291765.1  endonuclease V isoform X4

  23. XM_047435816.1XP_047291772.1  endonuclease V isoform X18

  24. XM_017024510.2XP_016879999.1  endonuclease V isoform X20

  25. XM_047435815.1XP_047291771.1  endonuclease V isoform X15

  26. XM_047435810.1XP_047291766.1  endonuclease V isoform X6

  27. XM_047435814.1XP_047291770.1  endonuclease V isoform X14

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    81317021..81339980
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054315824.1XP_054171799.1  endonuclease V isoform X23

  2. XM_054315807.1XP_054171782.1  endonuclease V isoform X5

  3. XM_054315820.1XP_054171795.1  endonuclease V isoform X13

  4. XM_054315823.1XP_054171798.1  endonuclease V isoform X22

  5. XM_054315828.1XP_054171803.1  endonuclease V isoform X24

  6. XM_054315817.1XP_054171792.1  endonuclease V isoform X12

  7. XM_054315829.1XP_054171804.1  endonuclease V isoform X21

  8. XM_054315814.1XP_054171789.1  endonuclease V isoform X12

  9. XM_054315816.1XP_054171791.1  endonuclease V isoform X12

  10. XM_054315815.1XP_054171790.1  endonuclease V isoform X12

  11. XM_054315819.1XP_054171794.1  endonuclease V isoform X12

  12. XM_054315830.1XP_054171805.1  endonuclease V isoform X21

  13. XM_054315818.1XP_054171793.1  endonuclease V isoform X12

  14. XM_054315803.1XP_054171778.1  endonuclease V isoform X1

  15. XM_054315811.1XP_054171786.1  endonuclease V isoform X9

  16. XM_054315805.1XP_054171780.1  endonuclease V isoform X3

  17. XM_054315813.1XP_054171788.1  endonuclease V isoform X11

  18. XM_054315809.1XP_054171784.1  endonuclease V isoform X7

  19. XM_054315810.1XP_054171785.1  endonuclease V isoform X8

  20. XM_054315825.1XP_054171800.1  endonuclease V isoform X17

  21. XM_054315804.1XP_054171779.1  endonuclease V isoform X2

  22. XM_054315812.1XP_054171787.1  endonuclease V isoform X10

  23. XM_054315806.1XP_054171781.1  endonuclease V isoform X4

  24. XM_054315826.1XP_054171801.1  endonuclease V isoform X18

  25. XM_054315827.1XP_054171802.1  endonuclease V isoform X20

  26. XM_054315822.1XP_054171797.1  endonuclease V isoform X15

  27. XM_054315808.1XP_054171783.1  endonuclease V isoform X6

  28. XM_054315821.1XP_054171796.1  endonuclease V isoform X14

RNA

  1. XR_008484812.1 RNA Sequence