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UBE2CP4 ubiquitin conjugating enzyme E2 C pseudogene 4 [ Homo sapiens (human) ]

Gene ID: 283711, updated on 27-Aug-2024

Summary

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Official Symbol
UBE2CP4provided by HGNC
Official Full Name
ubiquitin conjugating enzyme E2 C pseudogene 4provided by HGNC
Primary source
HGNC:HGNC:43553
See related
AllianceGenome:HGNC:43553
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
15q13.3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (31420117..31421168)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (29214235..29215286)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (31712320..31713371)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:31517937-31518509 Neighboring gene Sharpr-MPRA regulatory region 5138 Neighboring gene long intergenic non-protein coding RNA 2352 Neighboring gene long intergenic non-protein coding RNA 3034 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:31548124-31548696 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:31570698-31571198 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:31571199-31571699 Neighboring gene KLF13-II enhancer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:31594474-31595156 Neighboring gene KLF13-III enhancer Neighboring gene VISTA enhancer hs2231 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:31604403-31605163 Neighboring gene KLF13 promoter region Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:31621870-31622434 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:31627858-31628358 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:31628359-31628859 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:31634092-31634903 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:31634904-31635714 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:31649687-31650186 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:31666033-31667020 Neighboring gene KLF transcription factor 13 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6267 Neighboring gene uncharacterized LOC105370939 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:31727051-31727570 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:31732825-31733325 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:31756624-31757124 Neighboring gene REX4 homolog, 3'-5' exonuclease pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:31782018-31782667 Neighboring gene uncharacterized LOC105370753 Neighboring gene OTU deubiquitinase 7A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • ubiquitin conjugating enzyme E2C pseudogene 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_023395.3 

    Range
    101..1152
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    31420117..31421168
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    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_011332701.1 Reference GRCh38.p14 PATCHES

    Range
    3593504..3594555
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    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_2

Genomic

  1. NT_187660.1 Reference GRCh38.p14 ALT_REF_LOCI_2

    Range
    3705956..3707007
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    29214235..29215286
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    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_194305.1: Suppressed sequence

    Description
    NM_194305.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
Nucleotide Protein
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