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LINC01588 long intergenic non-protein coding RNA 1588 [ Homo sapiens (human) ]

Gene ID: 283551, updated on 11-Jun-2021

Summary

Official Symbol
LINC01588provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1588provided by HGNC
Primary source
HGNC:HGNC:27503
See related
Ensembl:ENSG00000214900
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C14orf182
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See LINC01588 in Genome Data Viewer
Location:
14q21.3
Exon count:
8
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 14 NC_000014.9 (49981669..50007520, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (50448387..50474238, complement)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100506446 Neighboring gene microRNA 6076 Neighboring gene uncharacterized LOC105370485 Neighboring gene long intergenic non-protein coding RNA 1599 Neighboring gene PDZ and LIM domain 1 pseudogene 1 Neighboring gene ribosomal protein S15a pseudogene 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC149108

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126496.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AK090420, AL117692, BC058283, BC128083
    Related
    ENST00000529902.2
  2. NR_126497.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate internal exon and contains an alternate 3' terminal exon, compared to variant 1.
    Source sequence(s)
    AK091232, AL117692, BC144351, DB328899
  3. NR_126498.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) contains alternate 5' and 3' terminal exons, and lacks an alternate internal exon, compared to variant 1.
    Source sequence(s)
    AK091232, AL117692, DB328899
    Related
    ENST00000399206.4
  4. NR_126499.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks two 5' exons but contains an alternate 5' terminal exon, and uses an alternate splice site in the 3' terminal exon, compared to variant 1.
    Source sequence(s)
    BC058283, BC128083
    Related
    ENST00000533506.5
  5. NR_126500.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) contains alternate 5' exon structure, and lacks several 3' exons but contains an alternate 3' terminal exon, compared to variant 1.
    Source sequence(s)
    AK090420, AL117692, BC144351, BX108105, CR980193

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p13 Primary Assembly

    Range
    49981669..50007520 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001012706.1: Suppressed sequence

    Description
    NM_001012706.1: This RefSeq was permanently suppressed because the gene is thought to be non-coding.
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