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HARBI1 harbinger transposase derived 1 [ Homo sapiens (human) ]

Gene ID: 283254, updated on 5-Aug-2018

Summary

Official Symbol
HARBI1provided by HGNC
Official Full Name
harbinger transposase derived 1provided by HGNC
Primary source
HGNC:HGNC:26522
See related
Ensembl:ENSG00000180423 MIM:615086; Vega:OTTHUMG00000166537
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C11orf77
Expression
Broad expression in testis (RPKM 5.1), brain (RPKM 1.4) and 25 other tissues See more
Orthologs

Genomic context

See HARBI1 in Genome Data Viewer
Location:
11p11.2
Exon count:
8
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 11 NC_000011.10 (46603027..46617894, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (46624856..46638933, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene autophagy and beclin 1 regulator 1 Neighboring gene ribosomal protein S10 pseudogene 19 Neighboring gene microRNA 3160-1 Neighboring gene microRNA 3160-2 Neighboring gene autophagy related 13 Neighboring gene Rho GTPase activating protein 1 Neighboring gene zinc finger protein 408

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Jun 15 11:32:44 2016

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ32675

Gene Ontology Provided by GOA

Function Evidence Code Pubs
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
nuclease activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
nucleic acid phosphodiester bond hydrolysis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytosol IDA
Inferred from Direct Assay
more info
 
microtubule organizing center IDA
Inferred from Direct Assay
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IDA
Inferred from Direct Assay
more info
 

General protein information

Preferred Names
putative nuclease HARBI1
Names
harbinger transposase-derived nuclease
NP_776172.1
XP_011518327.1
XP_011518328.1
XP_011518329.1
XP_011518330.1
XP_011518331.1
XP_016873091.1
XP_016873092.1
XP_016873093.1
XP_016873094.1
XP_016873095.1
XP_024304221.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_173811.3NP_776172.1  putative nuclease HARBI1

    See identical proteins and their annotated locations for NP_776172.1

    Status: VALIDATED

    Source sequence(s)
    AK057237, BM768489
    Consensus CDS
    CCDS7920.1
    UniProtKB/Swiss-Prot
    Q96MB7
    Related
    ENSP00000317743.3, OTTHUMP00000233318, ENST00000326737.3, OTTHUMT00000390291
    Conserved Domains (1) summary
    pfam13359
    Location:148300
    DDE_Tnp_4; DDE superfamily endonuclease

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p12 Primary Assembly

    Range
    46603027..46617894 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017017606.2XP_016873095.1  putative nuclease HARBI1 isoform X2

    UniProtKB/Swiss-Prot
    Q96MB7
    Conserved Domains (1) summary
    pfam13359
    Location:148300
    DDE_Tnp_4; DDE superfamily endonuclease
  2. XM_017017604.1XP_016873093.1  putative nuclease HARBI1 isoform X2

    UniProtKB/Swiss-Prot
    Q96MB7
    Conserved Domains (1) summary
    pfam13359
    Location:148300
    DDE_Tnp_4; DDE superfamily endonuclease
  3. XM_024448453.1XP_024304221.1  putative nuclease HARBI1 isoform X2

    Conserved Domains (1) summary
    pfam13359
    Location:148300
    DDE_Tnp_4; DDE superfamily endonuclease
  4. XM_017017605.2XP_016873094.1  putative nuclease HARBI1 isoform X2

    UniProtKB/Swiss-Prot
    Q96MB7
    Conserved Domains (1) summary
    pfam13359
    Location:148300
    DDE_Tnp_4; DDE superfamily endonuclease
  5. XM_011520028.3XP_011518330.1  putative nuclease HARBI1 isoform X1

    See identical proteins and their annotated locations for XP_011518330.1

    Conserved Domains (1) summary
    pfam13359
    Location:148328
    DDE_Tnp_4; DDE superfamily endonuclease
  6. XM_011520026.3XP_011518328.1  putative nuclease HARBI1 isoform X1

    See identical proteins and their annotated locations for XP_011518328.1

    Conserved Domains (1) summary
    pfam13359
    Location:148328
    DDE_Tnp_4; DDE superfamily endonuclease
  7. XM_011520029.2XP_011518331.1  putative nuclease HARBI1 isoform X1

    See identical proteins and their annotated locations for XP_011518331.1

    Conserved Domains (1) summary
    pfam13359
    Location:148328
    DDE_Tnp_4; DDE superfamily endonuclease
  8. XM_011520025.1XP_011518327.1  putative nuclease HARBI1 isoform X1

    See identical proteins and their annotated locations for XP_011518327.1

    Conserved Domains (1) summary
    pfam13359
    Location:148328
    DDE_Tnp_4; DDE superfamily endonuclease
  9. XM_017017603.2XP_016873092.1  putative nuclease HARBI1 isoform X1

    Conserved Domains (1) summary
    pfam13359
    Location:148328
    DDE_Tnp_4; DDE superfamily endonuclease
  10. XM_017017602.1XP_016873091.1  putative nuclease HARBI1 isoform X1

    Conserved Domains (1) summary
    pfam13359
    Location:148328
    DDE_Tnp_4; DDE superfamily endonuclease
  11. XM_011520027.1XP_011518329.1  putative nuclease HARBI1 isoform X1

    See identical proteins and their annotated locations for XP_011518329.1

    Conserved Domains (1) summary
    pfam13359
    Location:148328
    DDE_Tnp_4; DDE superfamily endonuclease
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