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Abcf3 ATP-binding cassette, sub-family F member 3 [ Mus musculus (house mouse) ]

Gene ID: 27406, updated on 11-Apr-2024

Summary

Official Symbol
Abcf3provided by MGI
Official Full Name
ATP-binding cassette, sub-family F member 3provided by MGI
Primary source
MGI:MGI:1351656
See related
Ensembl:ENSMUSG00000003234 AllianceGenome:MGI:1351656
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to enable ATP binding activity. Predicted to act upstream of or within defense response to virus. Is expressed in head mesenchyme; limb; skeletal musculature; tail; and tongue mesenchyme. Orthologous to human ABCF3 (ATP binding cassette subfamily F member 3). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in testis adult (RPKM 21.7), cerebellum adult (RPKM 14.5) and 28 other tissues See more
Orthologs
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Genomic context

Location:
16 A3; 16 12.46 cM
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (20367309..20380357)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (20548556..20561603)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E1488 Neighboring gene adaptor-related protein complex 2, mu 1 subunit Neighboring gene mitochondrial ribosomal protein S18B pseudogene Neighboring gene predicted gene, 20164 Neighboring gene predicted gene, 35685 Neighboring gene von Willebrand factor A domain containing 5B2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables ATP binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within defense response to virus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
ATP-binding cassette sub-family F member 3
Names
ATP-binding cassette, sub-family F (GCN20), member 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_013852.2NP_038880.1  ATP-binding cassette sub-family F member 3

    See identical proteins and their annotated locations for NP_038880.1

    Status: VALIDATED

    Source sequence(s)
    AC087898, BC032923, CD540120
    Consensus CDS
    CCDS28049.1
    UniProtKB/Swiss-Prot
    Q8K268, Q9JL49
    UniProtKB/TrEMBL
    A0A338P6L5
    Related
    ENSMUSP00000003319.6, ENSMUST00000003319.6
    Conserved Domains (4) summary
    cd03221
    Location:492683
    ABCF_EF-3; ATP-binding cassette domain of elongation factor 3, subfamily F
    PLN03073
    Location:6700
    PLN03073; ABC transporter F family; Provisional
    pfam12848
    Location:395477
    ABC_tran_Xtn; ABC transporter
    cl21455
    Location:266363
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

RNA

  1. NR_190180.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC087898

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    20367309..20380357
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_384567.5 RNA Sequence