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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_013235.1 RefSeqGene
- Range
-
5514..20268
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001163280.2 → NP_001156752.1 HIV Tat-specific factor 1
See identical proteins and their annotated locations for NP_001156752.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
- Source sequence(s)
-
AB209303, BC009896, BU633070
- Consensus CDS
-
CCDS14657.1
- UniProtKB/Swiss-Prot
-
O43719
- Related
- ENSP00000442699.1, ENST00000535601.5
- Conserved Domains (3) summary
-
- cd12281
Location:132 → 222
- RRM1_TatSF1_like; RNA recognition motif 1 in HIV Tat-specific factor 1 (Tat-SF1) and similar proteins
- cd12282
Location:263 → 353
- RRM2_TatSF1_like; RNA recognition motif 2 in HIV Tat-specific factor 1 (Tat-SF1) and similar proteins
- cl27511
Location:451 → 715
- Na_Ca_ex; Sodium/calcium exchanger protein
-
NM_014500.5 → NP_055315.2 HIV Tat-specific factor 1
See identical proteins and their annotated locations for NP_055315.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) is missing a 5' non-coding exon, and therefore, has a different 5' UTR compared to variant 1. Variants 1 and 2 encode the same protein.
- Source sequence(s)
-
BC009896, BU633070
- Consensus CDS
-
CCDS14657.1
- UniProtKB/Swiss-Prot
-
O43719
- Related
- ENSP00000218364.4, ENST00000218364.5
- Conserved Domains (3) summary
-
- cd12281
Location:132 → 222
- RRM1_TatSF1_like; RNA recognition motif 1 in HIV Tat-specific factor 1 (Tat-SF1) and similar proteins
- cd12282
Location:263 → 353
- RRM2_TatSF1_like; RNA recognition motif 2 in HIV Tat-specific factor 1 (Tat-SF1) and similar proteins
- cl27511
Location:451 → 715
- Na_Ca_ex; Sodium/calcium exchanger protein
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p13 Primary Assembly
Genomic
-
NC_000023.11 Reference GRCh38.p13 Primary Assembly
- Range
-
136497227..136512346
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_005262404.4 → XP_005262461.1 HIV Tat-specific factor 1 isoform X1
See identical proteins and their annotated locations for XP_005262461.1
- UniProtKB/Swiss-Prot
-
O43719
- Conserved Domains (3) summary
-
- cd12281
Location:132 → 222
- RRM1_TatSF1_like; RNA recognition motif 1 in HIV Tat-specific factor 1 (Tat-SF1) and similar proteins
- cd12282
Location:263 → 353
- RRM2_TatSF1_like; RNA recognition motif 2 in HIV Tat-specific factor 1 (Tat-SF1) and similar proteins
- cl27511
Location:451 → 715
- Na_Ca_ex; Sodium/calcium exchanger protein