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Rps11 ribosomal protein S11 [ Mus musculus (house mouse) ]

Gene ID: 27207, updated on 8-Dec-2018

Summary

Official Symbol
Rps11provided by MGI
Official Full Name
ribosomal protein S11provided by MGI
Primary source
MGI:MGI:1351329
See related
Ensembl:ENSMUSG00000003429
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Ubiquitous expression in placenta adult (RPKM 303.2), bladder adult (RPKM 302.0) and 28 other tissues See more
Orthologs

Genomic context

See Rps11 in Genome Data Viewer
Location:
7; 7 B3
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (45122388..45124389, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (52377758..52379759, complement)

Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene Fc receptor, IgG, alpha chain transporter Neighboring gene microRNA 150 Neighboring gene small nucleolar RNA, C/D box 35B Neighboring gene small nucleolar RNA, C/D box 35A Neighboring gene ribosomal protein L13A Neighboring gene small nucleolar RNA, C/D box 34

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
RNA binding IEA
Inferred from Electronic Annotation
more info
 
rRNA binding IEA
Inferred from Electronic Annotation
more info
 
structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytosolic small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytosolic small ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 
ribosome IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_013725.4NP_038753.1  40S ribosomal protein S11

    See identical proteins and their annotated locations for NP_038753.1

    Status: VALIDATED

    Source sequence(s)
    AK150738, CJ044201
    Consensus CDS
    CCDS39947.1
    UniProtKB/Swiss-Prot
    P62281
    UniProtKB/TrEMBL
    Q3UC02
    Related
    ENSMUSP00000003521.8, ENSMUST00000003521.9
    Conserved Domains (1) summary
    PTZ00241
    Location:1158
    PTZ00241; 40S ribosomal protein S11; Provisional

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

    Range
    45122388..45124389 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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