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Carmil3 capping protein regulator and myosin 1 linker 3 [ Mus musculus (house mouse) ]

Gene ID: 268747, updated on 31-Mar-2018

Summary

Official Symbol
Carmil3provided by MGI
Official Full Name
capping protein regulator and myosin 1 linker 3provided by MGI
Primary source
MGI:MGI:2448573
See related
Ensembl:ENSMUSG00000022211
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Lrrc16b; mFLJ00240
Expression
Biased expression in CNS E18 (RPKM 51.3), CNS E14 (RPKM 47.6) and 9 other tissues See more
Orthologs

Genomic context

See Carmil3 in Genome Data Viewer
Location:
14; 14 C3
Exon count:
40
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 14 NC_000080.6 (55490810..55508272)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 14 NC_000080.5 (56109930..56127101)

Chromosome 14 - NC_000080.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 41158 Neighboring gene dehydrogenase/reductase (SDR family) member 4 Neighboring gene copine VI Neighboring gene neural retina leucine zipper gene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
capping protein, Arp2/3 and myosin-I linker protein 3; leucine-rich repeat-containing protein 16B
Names
capping protein regulator and myosin 1 linker protein 3

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001024645.2NP_001019816.1  capping protein, Arp2/3 and myosin-I linker protein 3

    See identical proteins and their annotated locations for NP_001019816.1

    Status: VALIDATED

    Source sequence(s)
    AK148355, AK158466, BC060252, BC082805
    Consensus CDS
    CCDS36930.1
    UniProtKB/Swiss-Prot
    Q3UFQ8
    Related
    ENSMUSP00000075587.5, ENSMUST00000076236.6
    Conserved Domains (4) summary
    cd00116
    Location:307600
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:275303
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:245273
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam16000
    Location:7781062
    CARMIL_C; CARMIL C-terminus

RNA

  1. NR_155103.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC159002
  2. NR_155104.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK148355, AK158466, BC082805

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000080.6 Reference GRCm38.p4 C57BL/6J

    Range
    55490810..55508272
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006519059.3XP_006519122.1  leucine-rich repeat-containing protein 16B isoform X13

    Conserved Domains (2) summary
    cd00116
    Location:307600
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:275303
    LRR_RI; leucine-rich repeat [structural motif]
  2. XM_017316027.1XP_017171516.1  leucine-rich repeat-containing protein 16B isoform X5

  3. XM_006519054.3XP_006519117.1  leucine-rich repeat-containing protein 16B isoform X9

    Conserved Domains (3) summary
    cd00116
    Location:293586
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:261289
    LRR_RI; leucine-rich repeat [structural motif]
    pfam16000
    Location:7641049
    CARMIL_C; CARMIL C-terminus
  4. XM_006519049.3XP_006519112.1  leucine-rich repeat-containing protein 16B isoform X3

    Conserved Domains (4) summary
    cd00116
    Location:307600
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:275303
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:245273
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam16000
    Location:7781063
    CARMIL_C; CARMIL C-terminus
  5. XM_006519050.3XP_006519113.1  leucine-rich repeat-containing protein 16B isoform X4

    Conserved Domains (4) summary
    cd00116
    Location:307600
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:275303
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:245273
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam16000
    Location:7781063
    CARMIL_C; CARMIL C-terminus
  6. XM_006519047.3XP_006519110.1  leucine-rich repeat-containing protein 16B isoform X1

    Conserved Domains (4) summary
    cd00116
    Location:307600
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:275303
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:245273
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam16000
    Location:7781063
    CARMIL_C; CARMIL C-terminus
  7. XM_006519053.3XP_006519116.1  leucine-rich repeat-containing protein 16B isoform X8

    Conserved Domains (4) summary
    cd00116
    Location:307600
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:275303
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:245273
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam16000
    Location:7781063
    CARMIL_C; CARMIL C-terminus
  8. XM_006519048.3XP_006519111.1  leucine-rich repeat-containing protein 16B isoform X2

    Conserved Domains (4) summary
    cd00116
    Location:307600
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:275303
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:245273
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam16000
    Location:7781062
    CARMIL_C; CARMIL C-terminus
  9. XM_006519051.3XP_006519114.1  leucine-rich repeat-containing protein 16B isoform X6

    Conserved Domains (4) summary
    cd00116
    Location:307600
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:275303
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:245273
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam16000
    Location:7781063
    CARMIL_C; CARMIL C-terminus
  10. XM_006519052.3XP_006519115.1  leucine-rich repeat-containing protein 16B isoform X7

    Conserved Domains (4) summary
    cd00116
    Location:307600
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:275303
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:245273
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam16000
    Location:7781062
    CARMIL_C; CARMIL C-terminus
  11. XM_006519055.3XP_006519118.1  leucine-rich repeat-containing protein 16B isoform X10

    See identical proteins and their annotated locations for XP_006519118.1

    Conserved Domains (4) summary
    cd00116
    Location:160453
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:128156
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:98126
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam16000
    Location:631916
    CARMIL_C; CARMIL C-terminus
  12. XM_006519057.2XP_006519120.1  leucine-rich repeat-containing protein 16B isoform X11

    Conserved Domains (3) summary
    cd00116
    Location:24272
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:5381
    LRR_RI; leucine-rich repeat [structural motif]
    pfam16000
    Location:495780
    CARMIL_C; CARMIL C-terminus
  13. XM_006519056.2XP_006519119.1  leucine-rich repeat-containing protein 16B isoform X10

    See identical proteins and their annotated locations for XP_006519119.1

    Conserved Domains (4) summary
    cd00116
    Location:160453
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:128156
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:98126
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam16000
    Location:631916
    CARMIL_C; CARMIL C-terminus
  14. XM_006519058.2XP_006519121.1  leucine-rich repeat-containing protein 16B isoform X12

    Conserved Domains (3) summary
    cd00116
    Location:37249
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:1445
    LRR_RI; leucine-rich repeat [structural motif]
    pfam16000
    Location:399684
    CARMIL_C; CARMIL C-terminus
  15. XM_006519060.3XP_006519123.1  leucine-rich repeat-containing protein 16B isoform X14

    Conserved Domains (1) summary
    pfam16000
    Location:110395
    CARMIL_C; CARMIL C-terminus
  16. XM_006519061.3XP_006519124.1  leucine-rich repeat-containing protein 16B isoform X15

    Conserved Domains (1) summary
    pfam16000
    Location:91376
    CARMIL_C; CARMIL C-terminus

RNA

  1. XR_383183.3 RNA Sequence

  2. XR_383181.3 RNA Sequence

    Related
    ENSMUST00000226757.1
  3. XR_383182.3 RNA Sequence

    Related
    ENSMUST00000228877.1
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