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VIRMA vir like m6A methyltransferase associated [ Homo sapiens (human) ]

Gene ID: 25962, updated on 24-Nov-2020

Summary

Official Symbol
VIRMAprovided by HGNC
Official Full Name
vir like m6A methyltransferase associatedprovided by HGNC
Primary source
HGNC:HGNC:24500
See related
Ensembl:ENSG00000164944 MIM:616447
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
MSTP054; fSAP121; KIAA1429
Expression
Ubiquitous expression in testis (RPKM 11.6), ovary (RPKM 8.4) and 25 other tissues See more
Orthologs

Genomic context

See VIRMA in Genome Data Viewer
Location:
8q22.1
Exon count:
25
Annotation release Status Assembly Chr Location
109.20201120 current GRCh38.p13 (GCF_000001405.39) 8 NC_000008.11 (94487689..94553469, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (95500005..95565746, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene ribosomal protein S4X pseudogene 10 Neighboring gene RAD54 homolog B Neighboring gene fibrinogen silencer binding protein Neighboring gene uncharacterized LOC101926977 Neighboring gene ribosomal protein L31 pseudogene Neighboring gene long intergenic non-protein coding RNA 2894

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC138493, MGC141940, DKFZp434I116, DKFZp781B2117

Gene Ontology Provided by GOA

Function Evidence Code Pubs
RNA binding HDA PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
RNA splicing IEA
Inferred from Electronic Annotation
more info
 
mRNA alternative polyadenylation IDA
Inferred from Direct Assay
more info
PubMed 
mRNA methylation IDA
Inferred from Direct Assay
more info
PubMed 
mRNA methylation IMP
Inferred from Mutant Phenotype
more info
PubMed 
mRNA processing IEA
Inferred from Electronic Annotation
more info
 
multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
RNA N6-methyladenosine methyltransferase complex IDA
Inferred from Direct Assay
more info
PubMed 
colocalizes_with RNA N6-methyladenosine methyltransferase complex IDA
Inferred from Direct Assay
more info
PubMed 
cytosol IDA
Inferred from Direct Assay
more info
 
nuclear body IDA
Inferred from Direct Assay
more info
 
nuclear speck IDA
Inferred from Direct Assay
more info
PubMed 
nucleoplasm IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
protein virilizer homolog
Names
functional spliceosome-associated protein 121
virilizer homolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_015496.5NP_056311.2  protein virilizer homolog isoform 1

    See identical proteins and their annotated locations for NP_056311.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AA731668, AB037850, AC023632, AL832487, BC113380
    Consensus CDS
    CCDS34923.1
    UniProtKB/Swiss-Prot
    Q69YN4
    Related
    ENSP00000297591.5, ENST00000297591.10
    Conserved Domains (2) summary
    pfam15502
    Location:17031808
    MPLKIP; M-phase-specific PLK1-interacting protein
    pfam15912
    Location:5235
    VIR_N; Virilizer, N-terminal
  2. NM_183009.3NP_892121.1  protein virilizer homolog isoform 2

    See identical proteins and their annotated locations for NP_892121.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 3' UTR and coding sequence compared to variant 1. The resulting isoform (2) has a shorter and distinct C-terminus compared to isoform 1.
    Source sequence(s)
    AF116724, BC113380
    Consensus CDS
    CCDS47894.1
    UniProtKB/Swiss-Prot
    Q69YN4
    Related
    ENSP00000398390.2, ENST00000421249.2
    Conserved Domains (1) summary
    pfam15912
    Location:5235
    VIR_N; Virilizer, N-terminal

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20201120

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p13 Primary Assembly

    Range
    94487689..94553469 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017013308.1XP_016868797.1  protein virilizer homolog isoform X1

  2. XM_017013306.1XP_016868795.1  protein virilizer homolog isoform X1

  3. XM_017013307.1XP_016868796.1  protein virilizer homolog isoform X1

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