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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001256741.2 → NP_001243670.1 CCR4-NOT transcription complex subunit 10 isoform 2
See identical proteins and their annotated locations for NP_001243670.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks an exon in the coding region, but maintains the reading frame, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
- Source sequence(s)
-
AC138972, AC139452
- Consensus CDS
-
CCDS58821.1
- UniProtKB/Swiss-Prot
-
Q9H9A5
- Related
- ENSP00000329376.6, ENST00000331889.10
- Conserved Domains (2) summary
-
- COG0457
Location:86 → 274
- TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
- sd00006
Location:296 → 321
- TPR; TPR repeat [structural motif]
-
NM_001256742.2 → NP_001243671.1 CCR4-NOT transcription complex subunit 10 isoform 3
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR, lacks a portion of the 5' coding region and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (3) is longer and has a distinct N-terminus, compared to isoform 1.
- Source sequence(s)
-
AC138972, AC139452
- Consensus CDS
-
CCDS58822.1
- UniProtKB/Swiss-Prot
-
Q9H9A5
- Related
- ENSP00000399862.2, ENST00000454516.7
- Conserved Domains (2) summary
-
- COG0457
Location:146 → 334
- TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
- sd00006
Location:356 → 381
- TPR; TPR repeat [structural motif]
-
NM_001393366.1 → NP_001380295.1 CCR4-NOT transcription complex subunit 10 isoform 4
Status: VALIDATED
- Source sequence(s)
-
AC138972, AC139452
- Conserved Domains (2) summary
-
- COG0457
Location:86 → 274
- TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
- sd00006
Location:296 → 321
- TPR; TPR repeat [structural motif]
-
NM_001393367.1 → NP_001380296.1 CCR4-NOT transcription complex subunit 10 isoform 5
Status: VALIDATED
- Source sequence(s)
-
AC138972, AC139452
- Conserved Domains (2) summary
-
- COG0457
Location:86 → 274
- TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
- sd00006
Location:296 → 321
- TPR; TPR repeat [structural motif]
-
NM_001393368.1 → NP_001380297.1 CCR4-NOT transcription complex subunit 10 isoform 6
Status: VALIDATED
- Source sequence(s)
-
AC138972, AC139452
- Conserved Domains (2) summary
-
- COG0457
Location:86 → 274
- TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
- sd00006
Location:296 → 321
- TPR; TPR repeat [structural motif]
-
NM_001393369.1 → NP_001380298.1 CCR4-NOT transcription complex subunit 10 isoform 7
Status: VALIDATED
- Source sequence(s)
-
AC138972, AC139452
- Conserved Domains (2) summary
-
- COG0457
Location:86 → 274
- TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
- sd00006
Location:296 → 321
- TPR; TPR repeat [structural motif]
-
NM_015442.3 → NP_056257.1 CCR4-NOT transcription complex subunit 10 isoform 1
See identical proteins and their annotated locations for NP_056257.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes isoform 1.
- Source sequence(s)
-
AC138972, AC139452
- Consensus CDS
-
CCDS2655.1
- UniProtKB/Swiss-Prot
- Q9H9A5, Q9UFJ2
- Related
- ENSP00000330060.5, ENST00000328834.10
- Conserved Domains (2) summary
-
- COG0457
Location:86 → 274
- TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
- sd00006
Location:296 → 321
- TPR; TPR repeat [structural motif]
RNA
-
NR_046352.2 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) lacks three exons and includes an alternate exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC138972, AC139452
- Related
-
ENST00000435630.5
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000003.12 Reference GRCh38.p14 Primary Assembly
- Range
-
32685188..32773875
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006713085.4 → XP_006713148.1 CCR4-NOT transcription complex subunit 10 isoform X2
- Conserved Domains (2) summary
-
- COG0457
Location:146 → 334
- TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
- sd00006
Location:356 → 381
- TPR; TPR repeat [structural motif]
-
XM_006713084.4 → XP_006713147.1 CCR4-NOT transcription complex subunit 10 isoform X1
- Conserved Domains (2) summary
-
- COG0457
Location:146 → 334
- TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
- sd00006
Location:356 → 381
- TPR; TPR repeat [structural motif]
-
XM_047447927.1 → XP_047303883.1 CCR4-NOT transcription complex subunit 10 isoform X3
-
XM_011533566.3 → XP_011531868.1 CCR4-NOT transcription complex subunit 10 isoform X4
- Conserved Domains (2) summary
-
- COG0457
Location:146 → 334
- TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
- sd00006
Location:356 → 381
- TPR; TPR repeat [structural motif]
-
XM_047447928.1 → XP_047303884.1 CCR4-NOT transcription complex subunit 10 isoform X5
-
XM_011533567.3 → XP_011531869.1 CCR4-NOT transcription complex subunit 10 isoform X6
- Conserved Domains (1) summary
-
- sd00006
Location:68 → 93
- TPR; TPR repeat [structural motif]
RNA
-
XR_007095661.1 RNA Sequence
Reference GRCh38.p14 PATCHES
Genomic
-
NW_025791770.1 Reference GRCh38.p14 PATCHES
- Range
-
53414..142101
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060927.1 Alternate T2T-CHM13v2.0
- Range
-
32684705..32772074
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)