U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

NATD1 N-acetyltransferase domain containing 1 [ Homo sapiens (human) ]

Gene ID: 256302, updated on 5-Mar-2024

Summary

Official Symbol
NATD1provided by HGNC
Official Full Name
N-acetyltransferase domain containing 1provided by HGNC
Primary source
HGNC:HGNC:30770
See related
Ensembl:ENSG00000274180 AllianceGenome:HGNC:30770
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
Gtlf3b; C17orf103
Expression
Ubiquitous expression in fat (RPKM 12.3), bone marrow (RPKM 8.0) and 24 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See NATD1 in Genome Data Viewer
Location:
17p11.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (21238870..21253410, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (21187775..21202316, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (21142183..21156722, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8313 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8314 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11881 Neighboring gene TMEM11 divergent transcript Neighboring gene RNA, 7SL, cytoplasmic 426, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:21142166-21142910 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:21143656-21144400 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:21147379-21148121 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:21152353-21152854 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8315 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8316 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:21166079-21166648 Neighboring gene eukaryotic translation initiation factor 1 pseudogene 5 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11882 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8317 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8318 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11883 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:21187095-21187595 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11884 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr17:21190872-21192071 Neighboring gene mitogen-activated protein kinase kinase 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:21200045-21200584 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:21200745-21201246 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:21201247-21201746 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:21212475-21212974 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:21215299-21215916

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Potential readthrough

Included gene: TMEM11

Clone Names

  • MGC33894, DKFZp762H185, DKFZp761I1115

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

General protein information

Preferred Names
protein NATD1
Names
N-acetyltransferase domain-containing protein 1
gene trap locus F3b
protein GTLF3B
transcript expressed during hematopoiesis 2

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_152914.3NP_690878.2  protein NATD1

    See identical proteins and their annotated locations for NP_690878.2

    Status: VALIDATED

    Source sequence(s)
    AC087294, AK126856
    UniProtKB/Swiss-Prot
    A8MWQ7, B3KX70, Q8N6N6
    Related
    ENSP00000478388.1, ENST00000611551.1
    Conserved Domains (1) summary
    pfam14542
    Location:29103
    Acetyltransf_CG; GCN5-related N-acetyl-transferase

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    21238870..21253410 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    21187775..21202316 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)