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Ccdc9 coiled-coil domain containing 9 [ Mus musculus (house mouse) ]

Gene ID: 243846, updated on 17-Aug-2024

Summary

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Official Symbol
Ccdc9provided by MGI
Official Full Name
coiled-coil domain containing 9provided by MGI
Primary source
MGI:MGI:1921443
See related
Ensembl:ENSMUSG00000041375 AllianceGenome:MGI:1921443
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2600011L02Rik
Summary
Orthologous to human CCDC9 (coiled-coil domain containing 9). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 9.0), colon adult (RPKM 8.3) and 28 other tissues See more
Orthologs
human all
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Genomic context

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Location:
7 A2; 7 8.78 cM
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (16005938..16020713, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (16272013..16286807, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E9684 Neighboring gene predicted gene, 26473 Neighboring gene complement component 5a receptor 2 Neighboring gene complement component 5a receptor 1 Neighboring gene InaF motif containing 1 Neighboring gene STARR-positive B cell enhancer ABC_E3699 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:16880265-16880374 Neighboring gene STARR-positive B cell enhancer ABC_E6516 Neighboring gene STARR-seq mESC enhancer starr_18129 Neighboring gene STARR-seq mESC enhancer starr_18130 Neighboring gene BCL2 binding component 3 Neighboring gene SUMO1 activating enzyme subunit 1 Neighboring gene predicted gene, 57781

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Circular RNA circCCDC9 alleviates ischaemic stroke ischaemia/reperfusion injury via the Notch pathway. Wu L, et al. J Cell Mol Med, 2020 Dec. PMID 33124180, Free PMC Article
  2. Network organization of the huntingtin proteomic interactome in mammalian brain. Shirasaki DI, et al. Neuron, 2012 Jul 12. PMID 22794259, Free PMC Article
  3. ATG5 is required for B cell polarization and presentation of particulate antigens. Arbogast F, et al. Autophagy, 2019 Feb. PMID 30196744, Free PMC Article
  4. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
  5. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article

See all (17) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Circular RNA circCCDC9 alleviates ischaemic stroke ischaemia/reperfusion injury via the Notch pathway.
    Title: Circular RNA circCCDC9 alleviates ischaemic stroke ischaemia/reperfusion injury via the Notch pathway.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables RNA binding ISO
Inferred from Sequence Orthology
more info
  
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
part_of exon-exon junction complex ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
coiled-coil domain-containing protein 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001136471.2 → NP_001129943.2  coiled-coil domain-containing protein 9 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC156630
    Consensus CDS
    CCDS52039.1
    UniProtKB/TrEMBL
    D3YW42
    Related
    ENSMUSP00000114088.4, ENSMUST00000118976.10
    Conserved Domains (1) summary
    PRK12678
    Location:39 → 249
    PRK12678; transcription termination factor Rho; Provisional

  2. NM_001382411.3 → NP_001369340.2  coiled-coil domain-containing protein 9 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC156630
    Conserved Domains (2) summary
    PRK12678
    Location:39 → 249
    PRK12678; transcription termination factor Rho; Provisional
    pfam15266
    Location:204 → 371
    DUF4594; Domain of unknown function (DUF4594)

  3. NM_001382412.1 → NP_001369341.1  coiled-coil domain-containing protein 9 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC156630
    Conserved Domains (2) summary
    PRK12678
    Location:16 → 251
    PRK12678; transcription termination factor Rho; Provisional
    pfam15266
    Location:206 → 373
    DUF4594; Domain of unknown function (DUF4594)

  4. NM_001382413.3 → NP_001369342.2  coiled-coil domain-containing protein 9 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC156630
    Conserved Domains (2) summary
    PRK12678
    Location:39 → 249
    PRK12678; transcription termination factor Rho; Provisional
    pfam15266
    Location:204 → 371
    DUF4594; Domain of unknown function (DUF4594)

  5. NM_001382414.3 → NP_001369343.2  coiled-coil domain-containing protein 9 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC156630
    UniProtKB/Swiss-Prot
    Q8VC31
    Conserved Domains (2) summary
    PRK12678
    Location:39 → 249
    PRK12678; transcription termination factor Rho; Provisional
    pfam15266
    Location:204 → 371
    DUF4594; Domain of unknown function (DUF4594)

  6. NM_001382415.3 → NP_001369344.2  coiled-coil domain-containing protein 9 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AC156630
    Conserved Domains (1) summary
    PRK12678
    Location:39 → 249
    PRK12678; transcription termination factor Rho; Provisional

  7. NM_001382416.1 → NP_001369345.1  coiled-coil domain-containing protein 9 isoform 6

    Status: VALIDATED

    Source sequence(s)
    AC156630
    Conserved Domains (2) summary
    PRK12678
    Location:16 → 251
    PRK12678; transcription termination factor Rho; Provisional
    pfam15266
    Location:206 → 373
    DUF4594; Domain of unknown function (DUF4594)

  8. NM_172297.2 → NP_758501.3  coiled-coil domain-containing protein 9 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC156630
    Consensus CDS
    CCDS39784.2
    UniProtKB/Swiss-Prot
    Q8VC31
    Related
    ENSMUSP00000035597.10, ENSMUST00000041010.16
    Conserved Domains (2) summary
    PRK12678
    Location:39 → 249
    PRK12678; transcription termination factor Rho; Provisional
    pfam15266
    Location:204 → 371
    DUF4594; Domain of unknown function (DUF4594)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    16005938..16020713 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030242556.2 → XP_030098416.1  coiled-coil domain-containing protein 9 isoform X6

    Conserved Domains (2) summary
    PRK12678
    Location:16 → 251
    PRK12678; transcription termination factor Rho; Provisional
    pfam15266
    Location:206 → 373
    DUF4594; Domain of unknown function (DUF4594)

  2. XM_006539927.5 → XP_006539990.1  coiled-coil domain-containing protein 9 isoform X7

    Conserved Domains (2) summary
    PRK12678
    Location:16 → 251
    PRK12678; transcription termination factor Rho; Provisional
    pfam15266
    Location:206 → 373
    DUF4594; Domain of unknown function (DUF4594)

  3. XM_006539926.5 → XP_006539989.1  coiled-coil domain-containing protein 9 isoform X5

    Conserved Domains (2) summary
    PRK12678
    Location:16 → 251
    PRK12678; transcription termination factor Rho; Provisional
    pfam15266
    Location:206 → 373
    DUF4594; Domain of unknown function (DUF4594)

  4. XM_036153079.1 → XP_036008972.1  coiled-coil domain-containing protein 9 isoform X4

    Conserved Domains (2) summary
    PRK12678
    Location:16 → 251
    PRK12678; transcription termination factor Rho; Provisional
    pfam15266
    Location:206 → 373
    DUF4594; Domain of unknown function (DUF4594)

  5. XM_006539925.4 → XP_006539988.1  coiled-coil domain-containing protein 9 isoform X3

    Conserved Domains (2) summary
    PRK12678
    Location:16 → 251
    PRK12678; transcription termination factor Rho; Provisional
    pfam15266
    Location:206 → 373
    DUF4594; Domain of unknown function (DUF4594)

  6. XM_011250560.3 → XP_011248862.1  coiled-coil domain-containing protein 9 isoform X1

    Conserved Domains (2) summary
    PRK12678
    Location:16 → 251
    PRK12678; transcription termination factor Rho; Provisional
    pfam15266
    Location:206 → 373
    DUF4594; Domain of unknown function (DUF4594)

  7. XM_036153077.1 → XP_036008970.1  coiled-coil domain-containing protein 9 isoform X1

    Conserved Domains (2) summary
    PRK12678
    Location:16 → 251
    PRK12678; transcription termination factor Rho; Provisional
    pfam15266
    Location:206 → 373
    DUF4594; Domain of unknown function (DUF4594)

  8. XM_006539922.1 → XP_006539985.1  coiled-coil domain-containing protein 9 isoform X2

    See identical proteins and their annotated locations for XP_006539985.1

    Conserved Domains (2) summary
    PRK12678
    Location:40 → 250
    PRK12678; transcription termination factor Rho; Provisional
    pfam15266
    Location:205 → 372
    DUF4594; Domain of unknown function (DUF4594)

  9. XM_036153078.1 → XP_036008971.1  coiled-coil domain-containing protein 9 isoform X1

    Conserved Domains (2) summary
    PRK12678
    Location:16 → 251
    PRK12678; transcription termination factor Rho; Provisional
    pfam15266
    Location:206 → 373
    DUF4594; Domain of unknown function (DUF4594)

  10. XM_036153080.1 → XP_036008973.1  coiled-coil domain-containing protein 9 isoform X8

    UniProtKB/TrEMBL
    G3X927
    Conserved Domains (2) summary
    PRK12678
    Location:40 → 250
    PRK12678; transcription termination factor Rho; Provisional
    pfam15266
    Location:205 → 372
    DUF4594; Domain of unknown function (DUF4594)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8VC31.1 GenPept UniProtKB/Swiss-Prot:Q8VC31

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