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CCDC9 coiled-coil domain containing 9 [ Homo sapiens (human) ]

Gene ID: 26093, updated on 9-Oct-2022

Summary

Official Symbol
CCDC9provided by HGNC
Official Full Name
coiled-coil domain containing 9provided by HGNC
Primary source
HGNC:HGNC:24560
See related
Ensembl:ENSG00000105321 AllianceGenome:HGNC:24560
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Enables RNA binding activity. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in testis (RPKM 10.3), bone marrow (RPKM 8.8) and 25 other tissues See more
Orthologs
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Genomic context

See CCDC9 in Genome Data Viewer
Location:
19q13.32
Exon count:
16
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (47256525..47275723)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (50081834..50097265)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (47759782..47775210)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene BCL2 binding component 3 Neighboring gene microRNA 3190 Neighboring gene microRNA 3191 Neighboring gene uncharacterized LOC124904731 Neighboring gene CRISPRi-validated cis-regulatory element chr19.5064 Neighboring gene CRISPRi-validated cis-regulatory element chr19.5070 Neighboring gene InaF motif containing 1 Neighboring gene Sharpr-MPRA regulatory region 10427 Neighboring gene complement C5a receptor 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • DKFZp586M1019

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables RNA binding HDA PubMed 
enables RNA binding IDA
Inferred from Direct Assay
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
part_of exon-exon junction complex IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
coiled-coil domain-containing protein 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_015603.3NP_056418.1  coiled-coil domain-containing protein 9

    See identical proteins and their annotated locations for NP_056418.1

    Status: VALIDATED

    Source sequence(s)
    AK302153, AL050284, BC009743, BM737911, CR977312
    Consensus CDS
    CCDS12698.1
    UniProtKB/Swiss-Prot
    Q9Y3X0
    UniProtKB/TrEMBL
    B4DXW2
    Related
    ENSP00000221922.5, ENST00000221922.11
    Conserved Domains (2) summary
    pfam15266
    Location:219373
    DUF4594; Domain of unknown function (DUF4594)
    cl26386
    Location:305483
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    47256525..47275723
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047438583.1XP_047294539.1  coiled-coil domain-containing protein 9 isoform X2

  2. XM_047438580.1XP_047294536.1  coiled-coil domain-containing protein 9 isoform X1

    UniProtKB/TrEMBL
    A0A2R8Y4Z8
    Related
    ENSP00000494410.1, ENST00000643617.1
  3. XM_047438582.1XP_047294538.1  coiled-coil domain-containing protein 9 isoform X1

    UniProtKB/TrEMBL
    A0A2R8Y4Z8
  4. XM_047438581.1XP_047294537.1  coiled-coil domain-containing protein 9 isoform X1

    UniProtKB/TrEMBL
    A0A2R8Y4Z8
  5. XM_047438585.1XP_047294541.1  coiled-coil domain-containing protein 9 isoform X4

  6. XM_047438584.1XP_047294540.1  coiled-coil domain-containing protein 9 isoform X3

    UniProtKB/Swiss-Prot
    Q9Y3X0
  7. XM_017026578.2XP_016882067.1  coiled-coil domain-containing protein 9 isoform X3

    UniProtKB/Swiss-Prot
    Q9Y3X0
    Conserved Domains (2) summary
    pfam15266
    Location:219373
    DUF4594; Domain of unknown function (DUF4594)
    cl26386
    Location:305483
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
  8. XM_047438586.1XP_047294542.1  coiled-coil domain-containing protein 9 isoform X5

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    50081834..50097265
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)