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Nek4 NIMA (never in mitosis gene a)-related expressed kinase 4 [ Mus musculus (house mouse) ]

Gene ID: 23955, updated on 12-May-2024

Summary

Official Symbol
Nek4provided by MGI
Official Full Name
NIMA (never in mitosis gene a)-related expressed kinase 4provided by MGI
Primary source
MGI:MGI:1344404
See related
Ensembl:ENSMUSG00000021918 AllianceGenome:MGI:1344404
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Stk2
Summary
Enables manganese ion binding activity and protein serine/threonine kinase activity. Involved in protein phosphorylation. Located in cytoplasm. Is expressed in seminiferous tubule; spermatid; spermatocyte; and testis. Orthologous to human NEK4 (NIMA related kinase 4). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in testis adult (RPKM 7.7), CNS E11.5 (RPKM 2.9) and 24 other tissues See more
Orthologs
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Genomic context

See Nek4 in Genome Data Viewer
Location:
14 B; 14 19.09 cM
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (30673334..30710778)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (30951377..30988821)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene inter-alpha trypsin inhibitor, heavy chain 1 Neighboring gene STARR-positive B cell enhancer ABC_E3106 Neighboring gene predicted gene, 41121 Neighboring gene STARR-seq mESC enhancer starr_36312 Neighboring gene signal peptidase complex subunit 1 homolog (S. cerevisiae) Neighboring gene glycosyltransferase 8 domain containing 1 Neighboring gene small nucleolar RNA, C/D box 69 Neighboring gene guanine nucleotide binding protein nucleolar 3

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 
  • Gene trapped (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 
enables kinase activity IEA
Inferred from Electronic Annotation
more info
 
enables manganese ion binding IDA
Inferred from Direct Assay
more info
PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
 
enables protein serine/threonine kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables protein serine/threonine kinase activity IDA
Inferred from Direct Assay
more info
PubMed 
enables transferase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in DNA damage response IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in DNA damage response ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within cell cycle IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within cell division IEA
Inferred from Electronic Annotation
more info
 
involved_in mitotic cell cycle ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within phosphorylation IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of DNA-templated transcription ISO
Inferred from Sequence Orthology
more info
 
involved_in protein phosphorylation IDA
Inferred from Direct Assay
more info
PubMed 
involved_in regulation of cellular senescence ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in cell projection IEA
Inferred from Electronic Annotation
more info
 
located_in ciliary basal body ISO
Inferred from Sequence Orthology
more info
 
located_in ciliary plasm ISO
Inferred from Sequence Orthology
more info
 
located_in ciliary rootlet ISO
Inferred from Sequence Orthology
more info
 
located_in ciliary transition zone ISO
Inferred from Sequence Orthology
more info
 
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
serine/threonine-protein kinase Nek4
Names
serine/threonine-protein kinase 2
NP_001295257.1
NP_035979.1
XP_011243370.1
XP_011243371.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001308328.1NP_001295257.1  serine/threonine-protein kinase Nek4 isoform 2

    See identical proteins and their annotated locations for NP_001295257.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame exon in the 3' coding region, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
    Source sequence(s)
    AK078809, AK149584, BP762751
    Consensus CDS
    CCDS88612.1
    UniProtKB/Swiss-Prot
    O35673, Q9R1J1, Q9Z1J2
    UniProtKB/TrEMBL
    Q3UED6
    Related
    ENSMUSP00000154678.2, ENSMUST00000226551.2
    Conserved Domains (2) summary
    smart00220
    Location:6261
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cd08223
    Location:5261
    STKc_Nek4; Catalytic domain of the Serine/Threonine Kinase, Never In Mitosis gene A (NIMA)-related kinase 4
  2. NM_011849.3NP_035979.1  serine/threonine-protein kinase Nek4 isoform 1

    See identical proteins and their annotated locations for NP_035979.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AK078809, AK149584, BP762751, CN526970
    Consensus CDS
    CCDS26902.1
    UniProtKB/Swiss-Prot
    O35673, Q9R1J1, Q9Z1J2
    UniProtKB/TrEMBL
    Q6GTE9
    Related
    ENSMUSP00000154090.2, ENSMUST00000228328.2
    Conserved Domains (2) summary
    smart00220
    Location:6261
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cd08223
    Location:5261
    STKc_Nek4; Catalytic domain of the Serine/Threonine Kinase, Never In Mitosis gene A (NIMA)-related kinase 4

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    30673334..30710778
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011245069.4XP_011243371.1  serine/threonine-protein kinase Nek4 isoform X2

    UniProtKB/Swiss-Prot
    O35673, Q9R1J1, Q9Z1J2
    Related
    ENSMUSP00000153710.2, ENSMUST00000226146.2
    Conserved Domains (1) summary
    cl21453
    Location:1179
    PKc_like; Protein Kinases, catalytic domain
  2. XM_011245068.4XP_011243370.1  serine/threonine-protein kinase Nek4 isoform X1

    UniProtKB/TrEMBL
    F8WGA9
    Conserved Domains (1) summary
    cl21453
    Location:25254
    PKc_like; Protein Kinases, catalytic domain