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Colec10 collectin sub-family member 10 [ Mus musculus (house mouse) ]

Gene ID: 239447, updated on 12-Aug-2018

Summary

Official Symbol
Colec10provided by MGI
Official Full Name
collectin sub-family member 10provided by MGI
Primary source
MGI:MGI:3606482
See related
Ensembl:ENSMUSG00000038591
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
CL-L1
Expression
Biased expression in liver E18 (RPKM 6.6), placenta adult (RPKM 5.0) and 5 other tissues See more
Orthologs

Genomic context

See Colec10 in Genome Data Viewer
Location:
15 D1; 15 21.15 cM
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 15 NC_000081.6 (54410774..54466360)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (54242329..54297913)

Chromosome 15 - NC_000081.6Genomic Context describing neighboring genes Neighboring gene ribosomal protein L19 pseudogene Neighboring gene predicted gene 5215 Neighboring gene ribosomal protein L19 pseudogene Neighboring gene ubiquitin-conjugating enzyme E2 C-like Neighboring gene mal, T cell differentiation protein 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Pathways from BioSystems

General gene information

Markers

Homology

Clone Names

  • MGC123727, MGC123950, MGC123951

Gene Ontology Provided by MGI

Function Evidence Code Pubs
carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 
chemoattractant activity ISO
Inferred from Sequence Orthology
more info
 
mannose binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mannose binding IDA
Inferred from Direct Assay
more info
PubMed 
monosaccharide binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
cranial skeletal system development ISO
Inferred from Sequence Orthology
more info
 
defense response NAS
Non-traceable Author Statement
more info
PubMed 
embryo development ending in birth or egg hatching NAS
Non-traceable Author Statement
more info
PubMed 
heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules NAS
Non-traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
collagen trimer IEA
Inferred from Electronic Annotation
more info
 
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
cytosol NAS
Non-traceable Author Statement
more info
PubMed 
extracellular region IEA
Inferred from Electronic Annotation
more info
 
extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
extracellular space ISO
Inferred from Sequence Orthology
more info
 
nucleus NAS
Non-traceable Author Statement
more info
PubMed 

General protein information

Preferred Names
collectin-10
Names
collectin liver 1
collectin liver protein 1
collectin-L1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_173422.3NP_775598.2  collectin-10 precursor

    See identical proteins and their annotated locations for NP_775598.2

    Status: VALIDATED

    Source sequence(s)
    AK028423, BC108945
    Consensus CDS
    CCDS27469.1
    UniProtKB/Swiss-Prot
    Q8CF98
    Related
    ENSMUSP00000037867.3, ENSMUST00000036737.3
    Conserved Domains (2) summary
    cd03591
    Location:157272
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:4593
    Collagen; Collagen triple helix repeat (20 copies)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000081.6 Reference GRCm38.p4 C57BL/6J

    Range
    54410774..54466360
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011245615.1XP_011243917.1  collectin-10 isoform X1

    See identical proteins and their annotated locations for XP_011243917.1

    Conserved Domains (1) summary
    cd03591
    Location:76191
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
  2. XM_011245616.2XP_011243918.1  collectin-10 isoform X1

    See identical proteins and their annotated locations for XP_011243918.1

    Conserved Domains (1) summary
    cd03591
    Location:76191
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
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