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AVL9 AVL9 cell migration associated [ Homo sapiens (human) ]

Gene ID: 23080, updated on 11-Sep-2019

Summary

Official Symbol
AVL9provided by HGNC
Official Full Name
AVL9 cell migration associatedprovided by HGNC
Primary source
HGNC:HGNC:28994
See related
Ensembl:ENSG00000105778 MIM:612927
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
KIAA0241
Expression
Ubiquitous expression in brain (RPKM 9.9), colon (RPKM 8.5) and 25 other tissues See more
Orthologs

Genomic context

See AVL9 in Genome Data Viewer
Location:
7p14.3
Exon count:
19
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 7 NC_000007.14 (32495489..32588726)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (32535101..32628327)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene solute carrier family 25 member 5 pseudogene 5 Neighboring gene LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated Neighboring gene DPY19L1 pseudogene 1 Neighboring gene microRNA 550a-2 Neighboring gene microRNA 550b-2 Neighboring gene zinc and ring finger 2 pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • KIAA0241, DKFZp686G0344

Gene Ontology Provided by GOA

Process Evidence Code Pubs
cell migration IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
recycling endosome IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
late secretory pathway protein AVL9 homolog
Names
AVL9 homolog (S. cerevisiase)

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_015060.3NP_055875.1  late secretory pathway protein AVL9 homolog

    See identical proteins and their annotated locations for NP_055875.1

    Status: VALIDATED

    Source sequence(s)
    AC018633, AK090619, CN312870, DB477229
    Consensus CDS
    CCDS34613.1
    UniProtKB/Swiss-Prot
    Q8NBF6
    UniProtKB/TrEMBL
    A0A024RA36
    Related
    ENSP00000315568.4, ENST00000318709.9
    Conserved Domains (4) summary
    pfam07792
    Location:1676
    Afi1; Docking domain of Afi1 for Arf3 in vesicle trafficking
    pfam08616
    Location:381458
    SPA; Stabilization of polarity axis
    pfam09794
    Location:16520
    Avl9; Transport protein Avl9
    cl11519
    Location:116226
    DENN; DENN (AEX-3) domain

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p13 Primary Assembly

    Range
    32495489..32588726
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005249668.2XP_005249725.1  late secretory pathway protein AVL9 homolog isoform X1

    Conserved Domains (3) summary
    pfam07792
    Location:1676
    Afi1; Docking domain of Afi1 for Arf3 in vesicle trafficking
    pfam09794
    Location:16524
    Avl9; Transport protein Avl9
    cl11519
    Location:116226
    DENN; DENN (AEX-3) domain
  2. XM_005249669.2XP_005249726.1  late secretory pathway protein AVL9 homolog isoform X3

    Related
    ENSP00000387011.1, ENST00000409301.5
    Conserved Domains (3) summary
    pfam07792
    Location:1676
    Afi1; Docking domain of Afi1 for Arf3 in vesicle trafficking
    pfam09794
    Location:16524
    Avl9; Transport protein Avl9
    cl11519
    Location:116226
    DENN; DENN (AEX-3) domain
  3. XM_011515227.2XP_011513529.1  late secretory pathway protein AVL9 homolog isoform X2

    Related
    ENSP00000395134.1, ENST00000446718.1
    Conserved Domains (3) summary
    pfam07792
    Location:1676
    Afi1; Docking domain of Afi1 for Arf3 in vesicle trafficking
    pfam09794
    Location:16524
    Avl9; Transport protein Avl9
    cl11519
    Location:116226
    DENN; DENN (AEX-3) domain
  4. XM_005249670.2XP_005249727.1  late secretory pathway protein AVL9 homolog isoform X4

    Conserved Domains (3) summary
    pfam07792
    Location:1676
    Afi1; Docking domain of Afi1 for Arf3 in vesicle trafficking
    pfam09794
    Location:16426
    Avl9; Transport protein Avl9
    cl11519
    Location:116226
    DENN; DENN (AEX-3) domain
  5. XM_017011891.1XP_016867380.1  late secretory pathway protein AVL9 homolog isoform X5

  6. XM_005249671.4XP_005249728.1  late secretory pathway protein AVL9 homolog isoform X6

    Related
    ENSP00000492594.1, ENST00000640103.1
    Conserved Domains (2) summary
    pfam07792
    Location:1676
    Afi1; Docking domain of Afi1 for Arf3 in vesicle trafficking
    cl11519
    Location:116226
    DENN; DENN (AEX-3) domain
  7. XM_017011892.2XP_016867381.1  late secretory pathway protein AVL9 homolog isoform X7

RNA

  1. XR_001744608.1 RNA Sequence

  2. XR_926926.1 RNA Sequence

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