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Hnrnpa3 heterogeneous nuclear ribonucleoprotein A3 [ Mus musculus (house mouse) ]

Gene ID: 229279, updated on 3-Jun-2018
Official Symbol
Hnrnpa3provided by MGI
Official Full Name
heterogeneous nuclear ribonucleoprotein A3provided by MGI
Primary source
MGI:MGI:1917171
See related
Ensembl:ENSMUSG00000059005 Vega:OTTMUSG00000013249
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Hnrpa3; 2410013L13Rik; 2610209F03Rik; 2610510D13Rik
Expression
Broad expression in CNS E11.5 (RPKM 167.7), liver E14 (RPKM 103.2) and 15 other tissues See more
Orthologs
See Hnrnpa3 in Genome Data Viewer
Location:
2; 2 C3
Exon count:
12
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (75659216..75669407)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (75497316..75507464)

Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 39858 Neighboring gene predicted gene, 39859 Neighboring gene nuclear factor, erythroid derived 2, like 2 Neighboring gene RIKEN cDNA E030042O20 gene Neighboring gene predicted gene, 46749

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Clone Names

  • MGC37309, MGC101940, 2410013L13Rik, 2610209F03Rik, 2610510D13Rik

Gene Ontology Provided by MGI

Function Evidence Code Pubs
RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
RNA binding IEA
Inferred from Electronic Annotation
more info
 
RNA transmembrane transporter activity ISO
Inferred from Sequence Orthology
more info
 
mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mRNA binding ISO
Inferred from Sequence Orthology
more info
 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
RNA splicing IEA
Inferred from Electronic Annotation
more info
 
mRNA processing IEA
Inferred from Electronic Annotation
more info
 
mRNA transport ISO
Inferred from Sequence Orthology
more info
 
regulation of RNA metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
messenger ribonucleoprotein complex ISO
Inferred from Sequence Orthology
more info
 
neuron projection ISO
Inferred from Sequence Orthology
more info
 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus ISO
Inferred from Sequence Orthology
more info
 
ribonucleoprotein granule ISO
Inferred from Sequence Orthology
more info
 
spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
heterogeneous nuclear ribonucleoprotein A3
Names
hnRNP A3

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001359971.1NP_001346900.1  heterogeneous nuclear ribonucleoprotein A3 isoform c

    Status: VALIDATED

    Source sequence(s)
    AL772404
    Conserved Domains (3) summary
    cd12582
    Location:104183
    RRM2_hnRNPA3; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3) and similar proteins
    cd12763
    Location:1191
    RRM1_hnRNPA3; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3) and similar proteins
    pfam11627
    Location:310326
    HnRNPA1; Nuclear factor hnRNPA1
  2. NM_053263.1NP_444493.1  heterogeneous nuclear ribonucleoprotein A3 isoform c

    See identical proteins and their annotated locations for NP_444493.1

    Status: VALIDATED

    Source sequence(s)
    AB201711, AF463524, AK011930, AK076236, BC038364, BC085474, CJ048391, CJ048901
    Consensus CDS
    CCDS50610.1
    UniProtKB/Swiss-Prot
    Q8BG05
    UniProtKB/TrEMBL
    Q0VG47, Q5FB19, Q5U3M2
    Related
    ENSMUSP00000107593.1, OTTMUSP00000014244, ENSMUST00000111962.7, OTTMUST00000032009
    Conserved Domains (3) summary
    cd12582
    Location:104183
    RRM2_hnRNPA3; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3) and similar proteins
    cd12763
    Location:1191
    RRM1_hnRNPA3; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3) and similar proteins
    pfam11627
    Location:310326
    HnRNPA1; Nuclear factor hnRNPA1
  3. NM_146130.3NP_666242.2  heterogeneous nuclear ribonucleoprotein A3 isoform a

    See identical proteins and their annotated locations for NP_666242.2

    Status: VALIDATED

    Source sequence(s)
    AK011930, AK076236, AK133860, BC038364, BC085474, CJ048391, CO045618
    Consensus CDS
    CCDS16149.1
    UniProtKB/Swiss-Prot
    Q8BG05
    UniProtKB/TrEMBL
    Q3UZG3, Q5FB19, Q5U3M2
    Related
    ENSMUSP00000107595.1, OTTMUSP00000014245, ENSMUST00000111964.7, OTTMUST00000032010
    Conserved Domains (3) summary
    cd12582
    Location:126205
    RRM2_hnRNPA3; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3) and similar proteins
    cd12763
    Location:33113
    RRM1_hnRNPA3; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3) and similar proteins
    pfam11627
    Location:332348
    HnRNPA1; Nuclear factor hnRNPA1
  4. NM_198090.2NP_932758.1  heterogeneous nuclear ribonucleoprotein A3 isoform a

    See identical proteins and their annotated locations for NP_932758.1

    Status: VALIDATED

    Source sequence(s)
    BC038364, CJ048391, CJ048901
    Consensus CDS
    CCDS16149.1
    UniProtKB/Swiss-Prot
    Q8BG05
    UniProtKB/TrEMBL
    Q5FB19
    Related
    ENSMUSP00000088298.4, ENSMUST00000090792.10
    Conserved Domains (3) summary
    cd12582
    Location:126205
    RRM2_hnRNPA3; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3) and similar proteins
    cd12763
    Location:33113
    RRM1_hnRNPA3; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3) and similar proteins
    pfam11627
    Location:332348
    HnRNPA1; Nuclear factor hnRNPA1

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

    Range
    75659216..75669407
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011239516.2XP_011237818.1  heterogeneous nuclear ribonucleoprotein A3 isoform X1

    UniProtKB/Swiss-Prot
    Q8BG05
    UniProtKB/TrEMBL
    Q0VG47
    Related
    ENSMUSP00000126069.2, ENSMUST00000164947.8
    Conserved Domains (3) summary
    cd12582
    Location:104183
    RRM2_hnRNPA3; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3) and similar proteins
    cd12763
    Location:1191
    RRM1_hnRNPA3; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3) and similar proteins
    pfam11627
    Location:310326
    HnRNPA1; Nuclear factor hnRNPA1

RNA

  1. XR_866271.2 RNA Sequence

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