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Bahd1 bromo adjacent homology domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 228536, updated on 9-May-2024

Summary

Official Symbol
Bahd1provided by MGI
Official Full Name
bromo adjacent homology domain containing 1provided by MGI
Primary source
MGI:MGI:2139371
See related
Ensembl:ENSMUSG00000040007 AllianceGenome:MGI:2139371
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm117; mKIAA0945
Summary
Predicted to enable chromatin binding activity. Predicted to be involved in heterochromatin assembly and negative regulation of transcription, DNA-templated. Predicted to act upstream of or within chromatin organization. Predicted to be located in nucleoplasm. Predicted to be part of chromatin silencing complex. Orthologous to human BAHD1 (bromo adjacent homology domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in adrenal adult (RPKM 26.1), ovary adult (RPKM 14.6) and 28 other tissues See more
Orthologs
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Genomic context

See Bahd1 in Genome Data Viewer
Location:
2 E5; 2 59.72 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (118730817..118755009)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (118900336..118924528)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E2638 Neighboring gene isovaleryl coenzyme A dehydrogenase Neighboring gene STARR-positive B cell enhancer ABC_E4491 Neighboring gene STARR-positive B cell enhancer ABC_E9528 Neighboring gene predicted gene, 32798 Neighboring gene STARR-positive B cell enhancer ABC_E3393 Neighboring gene predicted gene, 32957 Neighboring gene carbohydrate sulfotransferase 14 Neighboring gene predicted gene, 39914

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • KIAA0945, MGC117747

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables chromatin binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables chromatin binding ISO
Inferred from Sequence Orthology
more info
 
enables transcription cis-regulatory region binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within chromatin organization IEA
Inferred from Electronic Annotation
more info
 
involved_in heterochromatin formation IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in heterochromatin formation ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of DNA-templated transcription IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in negative regulation of DNA-templated transcription ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
part_of chromatin silencing complex IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of chromatin silencing complex ISO
Inferred from Sequence Orthology
more info
 
located_in chromosome IEA
Inferred from Electronic Annotation
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
bromo adjacent homology domain-containing 1 protein
Names
BAH domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001045523.2NP_001038988.1  bromo adjacent homology domain-containing 1 protein

    Status: VALIDATED

    Source sequence(s)
    AL772255, AL845164
    Consensus CDS
    CCDS38202.1
    UniProtKB/Swiss-Prot
    A2AQV1, A6PWW9, B2RUB2, B7ZNH0, Q497V6, Q6ZQ21, Q80VH7
    UniProtKB/TrEMBL
    Z4YJL0
    Related
    ENSMUSP00000043130.7, ENSMUST00000036578.7
    Conserved Domains (3) summary
    PHA03247
    Location:149369
    PHA03247; large tegument protein UL36; Provisional
    PHA03307
    Location:279563
    PHA03307; transcriptional regulator ICP4; Provisional
    cd04714
    Location:615725
    BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    118730817..118755009
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006499265.4XP_006499328.1  bromo adjacent homology domain-containing 1 protein isoform X1

    UniProtKB/Swiss-Prot
    A2AQV1, A6PWW9, B2RUB2, B7ZNH0, Q497V6, Q6ZQ21, Q80VH7
    Conserved Domains (3) summary
    PHA03247
    Location:158378
    PHA03247; large tegument protein UL36; Provisional
    PHA03307
    Location:288572
    PHA03307; transcriptional regulator ICP4; Provisional
    cd04714
    Location:624734
    BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
  2. XM_006499267.4XP_006499330.1  bromo adjacent homology domain-containing 1 protein isoform X3

    UniProtKB/Swiss-Prot
    A2AQV1, A6PWW9, B2RUB2, B7ZNH0, Q497V6, Q6ZQ21, Q80VH7
    Conserved Domains (3) summary
    PHA03247
    Location:158378
    PHA03247; large tegument protein UL36; Provisional
    PHA03307
    Location:288572
    PHA03307; transcriptional regulator ICP4; Provisional
    cd04714
    Location:624731
    BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
  3. XM_006499266.5XP_006499329.1  bromo adjacent homology domain-containing 1 protein isoform X2

    UniProtKB/Swiss-Prot
    A2AQV1, A6PWW9, B2RUB2, B7ZNH0, Q497V6, Q6ZQ21, Q80VH7
    Conserved Domains (2) summary
    PHA03247
    Location:206568
    PHA03247; large tegument protein UL36; Provisional
    cd04714
    Location:623733
    BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
  4. XM_030250366.2XP_030106226.1  bromo adjacent homology domain-containing 1 protein isoform X5

    UniProtKB/Swiss-Prot
    A2AQV1, A6PWW9, B2RUB2, B7ZNH0, Q497V6, Q6ZQ21, Q80VH7
    Conserved Domains (3) summary
    PHA03247
    Location:149369
    PHA03247; large tegument protein UL36; Provisional
    PHA03307
    Location:279563
    PHA03307; transcriptional regulator ICP4; Provisional
    cd04714
    Location:615722
    BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
  5. XM_036161341.1XP_036017234.1  bromo adjacent homology domain-containing 1 protein isoform X6

    UniProtKB/Swiss-Prot
    A2AQV1, A6PWW9, B2RUB2, B7ZNH0, Q497V6, Q6ZQ21, Q80VH7
    Conserved Domains (2) summary
    PHA03247
    Location:197559
    PHA03247; large tegument protein UL36; Provisional
    cd04714
    Location:614721
    BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
  6. XM_030250363.1XP_030106223.1  bromo adjacent homology domain-containing 1 protein isoform X4

    UniProtKB/Swiss-Prot
    A2AQV1, A6PWW9, B2RUB2, B7ZNH0, Q497V6, Q6ZQ21, Q80VH7
    UniProtKB/TrEMBL
    Z4YJL0
    Conserved Domains (3) summary
    PHA03247
    Location:149369
    PHA03247; large tegument protein UL36; Provisional
    PHA03307
    Location:279563
    PHA03307; transcriptional regulator ICP4; Provisional
    cd04714
    Location:615725
    BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
  7. XM_030250365.1XP_030106225.1  bromo adjacent homology domain-containing 1 protein isoform X4

    UniProtKB/Swiss-Prot
    A2AQV1, A6PWW9, B2RUB2, B7ZNH0, Q497V6, Q6ZQ21, Q80VH7
    UniProtKB/TrEMBL
    Z4YJL0
    Conserved Domains (3) summary
    PHA03247
    Location:149369
    PHA03247; large tegument protein UL36; Provisional
    PHA03307
    Location:279563
    PHA03307; transcriptional regulator ICP4; Provisional
    cd04714
    Location:615725
    BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...