U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

FAM200A family with sequence similarity 200 member A [ Homo sapiens (human) ]

Gene ID: 221786, updated on 2-Nov-2024

Summary

Official Symbol
FAM200Aprovided by HGNC
Official Full Name
family with sequence similarity 200 member Aprovided by HGNC
Primary source
HGNC:HGNC:25401
See related
Ensembl:ENSG00000221909 AllianceGenome:HGNC:25401
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C7orf38
Summary
This gene encodes a protein of unknown function. The protein is weakly similar to transposase-like proteins in human and mouse. [provided by RefSeq, Jul 2008]
Expression
Ubiquitous expression in testis (RPKM 4.8), ovary (RPKM 4.4) and 25 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See FAM200A in Genome Data Viewer
Location:
7q22.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (99546300..99558543, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (100785219..100797747, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (99143923..99149737, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26322 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26323 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:99106467-99106660 Neighboring gene zinc finger with KRAB and SCAN domains 5 Neighboring gene zinc finger protein 3 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26324 Neighboring gene uncharacterized LOC105375422 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26325 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26326 Neighboring gene zinc finger protein 655 Neighboring gene transmembrane protein 225B

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • FLJ36794, DKFZp727G131

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_145111.4NP_659802.1  protein FAM200A

    See identical proteins and their annotated locations for NP_659802.1

    Status: VALIDATED

    Source sequence(s)
    AK290724, BC040214
    Consensus CDS
    CCDS5668.1
    UniProtKB/Swiss-Prot
    A4D293, A8K3V9, B2RD92, C9J6A8, D6W5T2, Q8N9P3, Q8TCP9
    UniProtKB/TrEMBL
    J3QT35
    Related
    ENSP00000411372.1, ENST00000449309.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    99546300..99558543 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024446681.2XP_024302449.1  protein FAM200A isoform X1

    UniProtKB/Swiss-Prot
    A4D293, A8K3V9, B2RD92, C9J6A8, D6W5T2, Q8N9P3, Q8TCP9
    UniProtKB/TrEMBL
    J3QT35
    Related
    ENSP00000386191.2, ENST00000408938.2
  2. XM_047420022.1XP_047275978.1  protein FAM200A isoform X1

    UniProtKB/Swiss-Prot
    A4D293, A8K3V9, B2RD92, C9J6A8, D6W5T2, Q8N9P3, Q8TCP9

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    100785219..100797747 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054357531.1XP_054213506.1  protein FAM200A isoform X1

    UniProtKB/Swiss-Prot
    A4D293, A8K3V9, B2RD92, C9J6A8, D6W5T2, Q8N9P3, Q8TCP9