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FAM200A family with sequence similarity 200 member A [ Homo sapiens (human) ]

Gene ID: 221786, updated on 25-Jan-2022

Summary

Official Symbol
FAM200Aprovided by HGNC
Official Full Name
family with sequence similarity 200 member Aprovided by HGNC
Primary source
HGNC:HGNC:25401
See related
Ensembl:ENSG00000221909 AllianceGenome:HGNC:25401
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C7orf38
Summary
This gene encodes a protein of unknown function. The protein is weakly similar to transposase-like proteins in human and mouse. [provided by RefSeq, Jul 2008]
Expression
Ubiquitous expression in testis (RPKM 4.8), ovary (RPKM 4.4) and 25 other tissues See more
Orthologs
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Genomic context

See FAM200A in Genome Data Viewer
Location:
7q22.1
Exon count:
4
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 7 NC_000007.14 (99546295..99559395, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (99143923..99149737, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene zinc finger with KRAB and SCAN domains 5 Neighboring gene zinc finger protein 3 pseudogene Neighboring gene uncharacterized LOC105375422 Neighboring gene zinc finger protein 655 Neighboring gene transmembrane protein 225B Neighboring gene zinc finger and SCAN domain containing 25 Neighboring gene ADP ribosylation factor 6 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ36794, DKFZp727G131

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_145111.4NP_659802.1  protein FAM200A

    See identical proteins and their annotated locations for NP_659802.1

    Status: VALIDATED

    Source sequence(s)
    AK290724, BC040214
    Consensus CDS
    CCDS5668.1
    UniProtKB/Swiss-Prot
    Q8TCP9
    Related
    ENSP00000411372.1, ENST00000449309.2
    Conserved Domains (1) summary
    pfam14291
    Location:140220
    DUF4371; Domain of unknown function (DUF4371)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p13 Primary Assembly

    Range
    99546295..99559395 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024446681.1XP_024302449.1  protein FAM200A isoform X1

    Related
    ENSP00000386191.2, ENST00000408938.2
  2. XM_011515913.2XP_011514215.1  protein FAM200A isoform X1

    See identical proteins and their annotated locations for XP_011514215.1

    UniProtKB/Swiss-Prot
    Q8TCP9
    Conserved Domains (1) summary
    pfam14291
    Location:140220
    DUF4371; Domain of unknown function (DUF4371)
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