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PXDC1 PX domain containing 1 [ Homo sapiens (human) ]

Gene ID: 221749, updated on 1-Jun-2020

Summary

Official Symbol
PXDC1provided by HGNC
Official Full Name
PX domain containing 1provided by HGNC
Primary source
HGNC:HGNC:21361
See related
Ensembl:ENSG00000168994
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C6orf145
Expression
Ubiquitous expression in liver (RPKM 40.1), placenta (RPKM 24.5) and 24 other tissues See more
Orthologs

Genomic context

See PXDC1 in Genome Data Viewer
Location:
6p25.2
Exon count:
8
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (3722604..3752297, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (3722836..3752246, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 3383 Neighboring gene uncharacterized LOC100507336 Neighboring gene translocase of outer mitochondrial membrane 5 homolog (yeast) pseudogene Neighboring gene uncharacterized LOC107986557 Neighboring gene family with sequence similarity 50 member B Neighboring gene uncharacterized LOC105374893

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
PX domain-containing protein 1
Names
PX domain-containing protein C6orf145

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_183373.4NP_899229.2  PX domain-containing protein 1

    See identical proteins and their annotated locations for NP_899229.2

    Status: VALIDATED

    Source sequence(s)
    AK024828, AK289598, BC056908, DA164068
    Consensus CDS
    CCDS4486.1
    UniProtKB/Swiss-Prot
    Q5TGL8
    Related
    ENSP00000369636.4, ENST00000380283.4
    Conserved Domains (1) summary
    cl02563
    Location:46127
    PX_domain; The Phox Homology domain, a phosphoinositide binding module

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    3722604..3752297 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011514393.3XP_011512695.1  PX domain-containing protein 1 isoform X1

    Related
    ENSP00000369630.2, ENST00000380277.6
    Conserved Domains (1) summary
    cl02563
    Location:3567
    PX_domain; The Phox Homology domain, a phosphoinositide binding module

RNA

  1. XR_001743252.2 RNA Sequence

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