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Pxdc1 PX domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 66895, updated on 17-Feb-2021

Summary

Official Symbol
Pxdc1provided by MGI
Official Full Name
PX domain containing 1provided by MGI
Primary source
MGI:MGI:1914145
See related
Ensembl:ENSMUSG00000021411
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1300014I06Rik
Expression
Broad expression in lung adult (RPKM 56.2), small intestine adult (RPKM 31.4) and 20 other tissues See more
Orthologs
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Genomic context

See Pxdc1 in Genome Data Viewer
Location:
13 A3.3; 13
Exon count:
6
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (34811823..34836664, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (34627840..34652681, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (34719710..34744550, complement)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 40909 Neighboring gene ATP synthase subunit g, mitochondrial pseudogene Neighboring gene predicted gene 15908 Neighboring gene family with sequence similarity 50, member B

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (3) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
PX domain-containing protein 1
Names
PX domain-containing protein C6orf145 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001382845.1NP_001369774.1  PX domain-containing protein 1 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC124687
    Conserved Domains (1) summary
    cl02563
    Location:45127
    PX_domain; The Phox Homology domain, a phosphoinositide binding module
  2. NM_025831.3NP_080107.3  PX domain-containing protein 1 isoform 2

    See identical proteins and their annotated locations for NP_080107.3

    Status: VALIDATED

    Source sequence(s)
    AC124687, AK005003
    Consensus CDS
    CCDS36632.1
    UniProtKB/Swiss-Prot
    Q8JZU6
    Related
    ENSMUSP00000051246.7, ENSMUST00000053459.14
    Conserved Domains (1) summary
    cl02563
    Location:45127
    PX_domain; The Phox Homology domain, a phosphoinositide binding module

RNA

  1. NR_168613.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC124687, BC037079
    Related
    ENSMUST00000021847.15
  2. NR_168618.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC124687, AK005003
    Related
    ENSMUST00000125037.3

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    34811823..34836664 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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