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RPP38-DT RPP38 divergent transcript [ Homo sapiens (human) ]

Gene ID: 221060, updated on 13-May-2022

Summary

Official Symbol
RPP38-DTprovided by HGNC
Official Full Name
RPP38 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:28582
See related
Ensembl:ENSG00000176236 AllianceGenome:HGNC:28582
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C10orf111
Summary
Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in testis (RPKM 1.2), thyroid (RPKM 0.4) and 21 other tissues See more
Orthologs
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Genomic context

See RPP38-DT in Genome Data Viewer
Location:
10p13
Exon count:
2
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (15095385..15097319, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (15109359..15111293, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (15137384..15139318, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene ACBD7-DCLRE1CP1 readthrough Neighboring gene acyl-CoA binding domain containing 7 Neighboring gene glyceraldehyde 3 phosphate dehydrogenase pseudogene 45 Neighboring gene uncharacterized LOC105376431 Neighboring gene ribonuclease P/MRP subunit p38 Neighboring gene N-myristoyltransferase 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Homology

Other Names

  • uncharacterized protein C10orf111

Clone Names

  • MGC35468

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_160789.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL590365
    Related
    ENST00000624760.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    15095385..15097319 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    15109359..15111293 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_153244.1: Suppressed sequence

    Description
    NM_153244.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.