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Tnfaip2 tumor necrosis factor, alpha-induced protein 2 [ Mus musculus (house mouse) ]

Gene ID: 21928, updated on 5-Jan-2022

Summary

Official Symbol
Tnfaip2provided by MGI
Official Full Name
tumor necrosis factor, alpha-induced protein 2provided by MGI
Primary source
MGI:MGI:104960
See related
Ensembl:ENSMUSG00000021281
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
B94; M-sec; Tnfip2; tnfb94; Exoc3l3
Summary
Predicted to enable SNARE binding activity. Predicted to be involved in exocyst localization and exocytosis. Predicted to act upstream of or within angiogenesis and cell differentiation. Predicted to be part of exocyst. Is expressed in several structures, including cardiovascular system; future brain; genitourinary system; immune system; and sensory organ. Orthologous to human TNFAIP2 (TNF alpha induced protein 2). [provided by Alliance of Genome Resources, Nov 2021]
Expression
Broad expression in bladder adult (RPKM 39.6), liver E14.5 (RPKM 31.1) and 21 other tissues See more
Orthologs
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Genomic context

See Tnfaip2 in Genome Data Viewer
Location:
12 F1; 12 60.99 cM
Exon count:
13
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (111408898..111421452)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (111442450..111455018)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (112680872..112693229)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene LBH domain containing 2 Neighboring gene exocyst complex component 3-like 4 Neighboring gene predicted gene, 40578 Neighboring gene predicted gene 266 Neighboring gene small nucleolar RNA, H/ACA box 28 Neighboring gene eukaryotic translation initiation factor 5

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables SNARE binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within angiogenesis IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within cell differentiation IEA
Inferred from Electronic Annotation
more info
 
involved_in exocyst localization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in exocytosis IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of exocyst IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
tumor necrosis factor alpha-induced protein 2
Names
TNF alpha-induced protein 2
primary response gene B94 protein
tumor necrosis factor induced protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_009396.2NP_033422.2  tumor necrosis factor alpha-induced protein 2

    See identical proteins and their annotated locations for NP_033422.2

    Status: VALIDATED

    Source sequence(s)
    BP767166, BY202445, L24118
    Consensus CDS
    CCDS26178.2
    UniProtKB/Swiss-Prot
    Q61333
    Related
    ENSMUSP00000099806.4, ENSMUST00000102745.10
    Conserved Domains (1) summary
    pfam06046
    Location:157688
    Sec6; Exocyst complex component Sec6

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    111408898..111421452
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006515793.5XP_006515856.1  tumor necrosis factor alpha-induced protein 2 isoform X2

    Conserved Domains (1) summary
    cl19885
    Location:157412
    Sec6; Exocyst complex component Sec6
  2. XM_036157378.1XP_036013271.1  tumor necrosis factor alpha-induced protein 2 isoform X1

RNA

  1. XR_381521.5 RNA Sequence

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