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Ska3 spindle and kinetochore associated complex subunit 3 [ Mus musculus (house mouse) ]

Gene ID: 219114, updated on 10-Oct-2019

Summary

Official Symbol
Ska3provided by MGI
Official Full Name
spindle and kinetochore associated complex subunit 3provided by MGI
Primary source
MGI:MGI:3041235
See related
Ensembl:ENSMUSG00000021965
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
F630043A04Rik
Expression
Broad expression in CNS E11.5 (RPKM 6.5), liver E14 (RPKM 5.2) and 20 other tissues See more
Orthologs

Genomic context

See Ska3 in Genome Data Viewer
Location:
14; 14 C3
Exon count:
9
Annotation release Status Assembly Chr Location
108 current GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (57806558..57826291, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 14 NC_000080.5 (58425398..58445000, complement)

Chromosome 14 - NC_000080.6Genomic Context describing neighboring genes Neighboring gene large tumor suppressor 2 Neighboring gene translation initiation factor IF-2-like Neighboring gene microRNA 3077 Neighboring gene Sin3-associated polypeptide 18 Neighboring gene U1 spliceosomal RNA Neighboring gene mitochondrial ribosomal protein L57 Neighboring gene zinc finger, DHHC domain containing 20

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
cell cycle IEA
Inferred from Electronic Annotation
more info
 
cell division IEA
Inferred from Electronic Annotation
more info
 
chromosome segregation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
chromosome segregation ISO
Inferred from Sequence Orthology
more info
 
mitotic cell cycle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitotic cell cycle ISO
Inferred from Sequence Orthology
more info
 
regulation of microtubule polymerization or depolymerization ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
centrosome ISO
Inferred from Sequence Orthology
more info
 
chromosome IEA
Inferred from Electronic Annotation
more info
 
chromosome, centromeric region IEA
Inferred from Electronic Annotation
more info
 
condensed chromosome outer kinetochore IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
condensed chromosome outer kinetochore ISO
Inferred from Sequence Orthology
more info
 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
cytosol ISO
Inferred from Sequence Orthology
more info
 
kinetochore ISO
Inferred from Sequence Orthology
more info
 
microtubule IEA
Inferred from Electronic Annotation
more info
 
microtubule cytoskeleton ISO
Inferred from Sequence Orthology
more info
 
mitotic spindle ISO
Inferred from Sequence Orthology
more info
 
spindle microtubule IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
spindle microtubule ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
spindle and kinetochore-associated protein 3

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_198605.3NP_941007.1  spindle and kinetochore-associated protein 3

    See identical proteins and their annotated locations for NP_941007.1

    Status: PROVISIONAL

    Source sequence(s)
    AC119813
    Consensus CDS
    CCDS27160.1
    UniProtKB/Swiss-Prot
    Q8C263
    Related
    ENSMUSP00000022536.2, ENSMUST00000022536.2
    Conserved Domains (1) summary
    cd12957
    Location:3101
    SKA3_N; Spindle and kinetochore-associated protein 3, N-terminal domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p6 C57BL/6J

Genomic

  1. NC_000080.6 Reference GRCm38.p6 C57BL/6J

    Range
    57806558..57826291 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006518859.4XP_006518922.3  spindle and kinetochore-associated protein 3 isoform X1

RNA

  1. XR_383169.4 RNA Sequence

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