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Clba1 clathrin binding box of aftiphilin containing 1 [ Mus musculus (house mouse) ]

Gene ID: 217887, updated on 11-Apr-2024

Summary

Official Symbol
Clba1provided by MGI
Official Full Name
clathrin binding box of aftiphilin containing 1provided by MGI
Primary source
MGI:MGI:2443738
See related
Ensembl:ENSMUSG00000037594 AllianceGenome:MGI:2443738
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Flj20080; C130001I08Rik
Summary
Predicted to enable clathrin binding activity. Predicted to be involved in intracellular transport. Predicted to be part of AP-1 adaptor complex. Predicted to be active in trans-Golgi network membrane. Orthologous to human CLBA1 (clathrin binding box of aftiphilin containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in testis adult (RPKM 34.3), kidney adult (RPKM 8.2) and 16 other tissues See more
Orthologs
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Genomic context

Location:
12 F1; 12 61.2 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (112772595..112779865)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (112808975..112816245)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E5361 Neighboring gene phospholipase D family member 4 Neighboring gene AHNAK nucleoprotein 2 Neighboring gene STARR-seq mESC enhancer starr_33365 Neighboring gene STARR-seq mESC enhancer starr_33367 Neighboring gene cell division cycle associated 4 Neighboring gene predicted gene, 52009 Neighboring gene STARR-seq mESC enhancer starr_33369 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:114093201-114093409 Neighboring gene G protein-coupled receptor 132 Neighboring gene predicted gene, 30461

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables clathrin binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in intracellular transport IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
part_of AP-1 adaptor complex IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in trans-Golgi network membrane IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
uncharacterized protein CLBA1
Names
clathrin-binding box of aftiphilin-containing protein 1
uncharacterized protein C14orf79 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_145450.3NP_663425.2  uncharacterized protein CLBA1

    See identical proteins and their annotated locations for NP_663425.2

    Status: PROVISIONAL

    Source sequence(s)
    AK081297
    Consensus CDS
    CCDS49192.1
    UniProtKB/Swiss-Prot
    Q8BHN9, Q8R1Z8
    Related
    ENSMUSP00000038002.4, ENSMUST00000037014.11
    Conserved Domains (1) summary
    pfam15045
    Location:189268
    Clathrin_bdg; Clathrin-binding box of Aftiphilin, vesicle trafficking

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    112772595..112779865
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)