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CLBA1 clathrin binding box of aftiphilin containing 1 [ Homo sapiens (human) ]

Gene ID: 122616, updated on 23-Nov-2021

Summary

Official Symbol
CLBA1provided by HGNC
Official Full Name
clathrin binding box of aftiphilin containing 1provided by HGNC
Primary source
HGNC:HGNC:20126
See related
Ensembl:ENSG00000140104
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C14orf79
Expression
Broad expression in testis (RPKM 5.0), thyroid (RPKM 3.6) and 25 other tissues See more
Orthologs
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Genomic context

See CLBA1 in Genome Data Viewer
Location:
14q32.33
Exon count:
7
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 14 NC_000014.9 (104985788..105000310)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (105452125..105461853)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene microRNA 12121 Neighboring gene centrosomal protein 170B Neighboring gene phospholipase D family member 4 Neighboring gene AHNAK nucleoprotein 2 Neighboring gene Sharpr-MPRA regulatory region 5751 Neighboring gene cell division cycle associated 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables clathrin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in intracellular transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
part_of AP-1 adaptor complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in trans-Golgi network membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
uncharacterized protein CLBA1
Names
clathrin-binding box of aftiphilin-containing protein 1
uncharacterized protein C14orf79

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001364170.1NP_001351099.1  uncharacterized protein CLBA1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AL512802
    Conserved Domains (1) summary
    pfam15045
    Location:193272
    Clathrin_bdg; Clathrin-binding box of Aftiphilin, vesicle trafficking
  2. NM_174891.4NP_777551.2  uncharacterized protein CLBA1 isoform 1

    See identical proteins and their annotated locations for NP_777551.2

    Status: VALIDATED

    Source sequence(s)
    AF038188, AK057249, AL512802
    Consensus CDS
    CCDS42000.1
    UniProtKB/Swiss-Prot
    Q96F83
    Related
    ENSP00000450114.1, ENST00000547315.6
    Conserved Domains (1) summary
    pfam15045
    Location:193272
    Clathrin_bdg; Clathrin-binding box of Aftiphilin, vesicle trafficking

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p13 Primary Assembly

    Range
    104985788..105000310
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005267318.4XP_005267375.1  uncharacterized protein CLBA1 isoform X2

    Conserved Domains (1) summary
    pfam15045
    Location:193272
    Clathrin_bdg; Clathrin-binding box of Aftiphilin, vesicle trafficking
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