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Zfp609 zinc finger protein 609 [ Mus musculus (house mouse) ]

Gene ID: 214812, updated on 5-Aug-2018

Summary

Official Symbol
Zfp609provided by MGI
Official Full Name
zinc finger protein 609provided by MGI
Primary source
MGI:MGI:2674092
See related
Ensembl:ENSMUSG00000040524 Vega:OTTMUSG00000034279
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Znf609; BC016271; mKIAA0295; 9830165N24
Expression
Ubiquitous expression in CNS E11.5 (RPKM 8.8), CNS E14 (RPKM 8.3) and 28 other tissues See more
Orthologs

Genomic context

See Zfp609 in Genome Data Viewer
Location:
9; 9 C
Exon count:
11
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 9 NC_000075.6 (65691578..65827564, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (65539390..65675371, complement)

Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene RNA binding protein with multiple splicing 2 Neighboring gene ornithine decarboxylase antizyme 2 Neighboring gene predicted gene, 30089 Neighboring gene predicted gene, 30314 Neighboring gene thyroid hormone receptor interactor 4 Neighboring gene ribosomal protein S2 pseudogene Neighboring gene PCNA clamp associated factor

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
muscle organ development IEA
Inferred from Electronic Annotation
more info
 
positive regulation of T cell differentiation in thymus TAS
Traceable Author Statement
more info
PubMed 
positive regulation of neuron migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of transcription by RNA polymerase II IDA
Inferred from Direct Assay
more info
PubMed 
regulation of myoblast proliferation IDA
Inferred from Direct Assay
more info
PubMed 
regulation of myoblast proliferation ISO
Inferred from Sequence Orthology
more info
 
regulation of transcription by RNA polymerase II IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
integrator complex IDA
Inferred from Direct Assay
more info
PubMed 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_172536.3NP_766124.2  zinc finger protein 609

    See identical proteins and their annotated locations for NP_766124.2

    Status: VALIDATED

    Source sequence(s)
    AC121979, AK036715, BC016271, BC058943, BF465900
    Consensus CDS
    CCDS23297.2
    UniProtKB/Swiss-Prot
    Q8BZ47
    Related
    ENSMUSP00000124089.1, OTTMUSP00000047254, ENSMUST00000159109.1, OTTMUST00000087135
    Conserved Domains (2) summary
    PTZ00449
    Location:10051228
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    COG5189
    Location:412533
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000075.6 Reference GRCm38.p4 C57BL/6J

    Range
    65691578..65827564 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006511007.3XP_006511070.1  zinc finger protein 609 isoform X1

    Conserved Domains (2) summary
    PTZ00449
    Location:776999
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    COG5189
    Location:183304
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
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