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9530068E07Rik RIKEN cDNA 9530068E07 gene [ Mus musculus (house mouse) ]

Gene ID: 213673, updated on 5-Mar-2024

Summary

Official Symbol
9530068E07Rikprovided by MGI
Official Full Name
RIKEN cDNA 9530068E07 geneprovided by MGI
Primary source
MGI:MGI:2654705
See related
Ensembl:ENSMUSG00000036275 AllianceGenome:MGI:2654705
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Kct2
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human C5orf15 (chromosome 5 open reading frame 15). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in ovary adult (RPKM 94.8), kidney adult (RPKM 89.0) and 28 other tissues See more
Orthologs
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Genomic context

Location:
11 B1.3; 11 31.86 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (52287255..52299550)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (52396428..52408723)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_29453 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:52132162-52132271 Neighboring gene predicted gene, 30217 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:52152988-52153277 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:52154886-52154995 Neighboring gene STARR-positive B cell enhancer ABC_E11479 Neighboring gene STARR-seq mESC enhancer starr_29458 Neighboring gene voltage-dependent anion channel 1 Neighboring gene STARR-positive B cell enhancer ABC_E3950 Neighboring gene STARR-seq mESC enhancer starr_29464 Neighboring gene 40S ribosomal protein S28-like Neighboring gene elastin-like

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (3) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • MGC28751

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
keratinocyte-associated transmembrane protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_153117.2NP_694757.1  keratinocyte-associated transmembrane protein 2 precursor

    See identical proteins and their annotated locations for NP_694757.1

    Status: PROVISIONAL

    Source sequence(s)
    AK079269
    Consensus CDS
    CCDS24672.1
    UniProtKB/Swiss-Prot
    Q5SVC5, Q8K201, Q922L7, Q9CVN1
    UniProtKB/TrEMBL
    Q3U339, Q3ULW9
    Related
    ENSMUSP00000048441.5, ENSMUST00000036952.5
    Conserved Domains (1) summary
    pfam07462
    Location:50168
    MSP1_C; Merozoite surface protein 1 (MSP1) C-terminus

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    52287255..52299550
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)