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C5orf15 chromosome 5 open reading frame 15 [ Homo sapiens (human) ]

Gene ID: 56951, updated on 21-Dec-2019

Summary

Official Symbol
C5orf15provided by HGNC
Official Full Name
chromosome 5 open reading frame 15provided by HGNC
Primary source
HGNC:HGNC:20656
See related
Ensembl:ENSG00000113583
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
KCT2; HTGN29
Expression
Ubiquitous expression in thyroid (RPKM 33.5), kidney (RPKM 32.1) and 25 other tissues See more
Orthologs

Genomic context

See C5orf15 in Genome Data Viewer
Location:
5q31.1
Exon count:
3
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (133955510..133968625, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (133291198..133304406, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105379182 Neighboring gene WNT signaling pathway activating non-coding RNA Neighboring gene uncharacterized LOC105379183 Neighboring gene voltage dependent anion channel 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

NHGRI GWAS Catalog

Description
Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.
NHGRI GWA Catalog
Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.
NHGRI GWA Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
keratinocyte-associated transmembrane protein 2
Names
keratinocytes associated transmembrane protein 2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_020199.3NP_064584.1  keratinocyte-associated transmembrane protein 2 precursor

    See identical proteins and their annotated locations for NP_064584.1

    Status: VALIDATED

    Source sequence(s)
    BC020875, BM681428, BP245947
    Consensus CDS
    CCDS4167.1
    UniProtKB/Swiss-Prot
    Q8NC54
    Related
    ENSP00000231512.3, ENST00000231512.5

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20191205

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    133955510..133968625 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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