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Stra8 stimulated by retinoic acid gene 8 [ Mus musculus (house mouse) ]

Gene ID: 20899, updated on 12-May-2024

Summary

Official Symbol
Stra8provided by MGI
Official Full Name
stimulated by retinoic acid gene 8provided by MGI
Primary source
MGI:MGI:107917
See related
Ensembl:ENSMUSG00000029848 AllianceGenome:MGI:107917
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Involved in several processes, including activation of meiosis; cellular response to retinoic acid; and germ cell development. Located in cytoplasm and nucleus. Is expressed in central nervous system; ganglia; gonad; spleen primordium; and trophoblast giant cell. Orthologous to human STRA8 (stimulated by retinoic acid 8). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 2.9) See more
Orthologs
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Genomic context

See Stra8 in Genome Data Viewer
Location:
6 B1; 6 15.2 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (34897098..34916279)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (34920163..34939344)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene transmembrane protein 140 Neighboring gene cell cycle regulator of NHEJ Neighboring gene WD repeat domain 91 Neighboring gene STARR-positive B cell enhancer mm9_chr6:34860831-34861132 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:34902551-34902660 Neighboring gene solute carrier family 23 member 4 Neighboring gene CCR4-NOT transcription complex, subunit 4 Neighboring gene STARR-seq mESC enhancer starr_15552 Neighboring gene STARR-positive B cell enhancer ABC_E2779 Neighboring gene predicted gene, 33046

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within DNA replication IEA
Inferred from Electronic Annotation
more info
 
involved_in activation of meiosis IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in activation of meiosis IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within cell differentiation IEA
Inferred from Electronic Annotation
more info
 
involved_in cellular response to retinoic acid IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in male germ-line stem cell asymmetric division IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in meiotic cell cycle IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in meiotic cell cycle IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in oogenesis IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in oogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of transcription by RNA polymerase II IDA
Inferred from Direct Assay
more info
PubMed 
involved_in regulation of transcription by RNA polymerase II IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in spermatogenesis IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in spermatogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in male germ cell nucleus IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
stimulated by retinoic acid gene 8 protein

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001410379.1NP_001397308.1  stimulated by retinoic acid gene 8 protein isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC153869
  2. NM_001410380.1NP_001397309.1  stimulated by retinoic acid gene 8 protein isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC153869
    UniProtKB/TrEMBL
    F2Z435
    Related
    ENSMUSP00000110649.2, ENSMUST00000114997.3
  3. NM_009292.3NP_033318.1  stimulated by retinoic acid gene 8 protein isoform 1

    See identical proteins and their annotated locations for NP_033318.1

    Status: VALIDATED

    Source sequence(s)
    AC153869
    Consensus CDS
    CCDS39458.1
    UniProtKB/Swiss-Prot
    P70278, Q496Q5
    Related
    ENSMUSP00000110651.2, ENSMUST00000114999.8
    Conserved Domains (1) summary
    cl00081
    Location:3090
    bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    34897098..34916279
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011241270.1XP_011239572.1  stimulated by retinoic acid gene 8 protein isoform X1

    See identical proteins and their annotated locations for XP_011239572.1

    UniProtKB/Swiss-Prot
    P70278, Q496Q5
    Related
    ENSMUSP00000031876.5, ENSMUST00000031876.12
    Conserved Domains (1) summary
    cl00081
    Location:3090
    bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily