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Ubald1 UBA-like domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 207740, updated on 2-Apr-2024

Summary

Official Symbol
Ubald1provided by MGI
Official Full Name
UBA-like domain containing 1provided by MGI
Primary source
MGI:MGI:1916255
See related
Ensembl:ENSMUSG00000039568 AllianceGenome:MGI:1916255
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Fam100a; 1500031H01Rik
Summary
Is expressed in central nervous system; embryo; retina; retina inner nuclear layer; and retina outer nuclear layer. Orthologous to human UBALD1 (UBA like domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in adrenal adult (RPKM 37.1), spleen adult (RPKM 36.8) and 28 other tissues See more
Orthologs
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Genomic context

Location:
16 A1; 16 2.48 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (4692641..4698190, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (4874779..4880320, complement)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene heme oxygenase 2 Neighboring gene cell death inducing Trp53 target 1 Neighboring gene STARR-positive B cell enhancer ABC_E7425 Neighboring gene STARR-seq mESC enhancer starr_39945 Neighboring gene RIKEN cDNA 4930562C15 gene Neighboring gene predicted gene, 36513 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:4878205-4878392 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:4879753-4879936 Neighboring gene STARR-positive B cell enhancer ABC_E1919 Neighboring gene mahogunin, ring finger 1 Neighboring gene STARR-positive B cell enhancer mm9_chr16:4938936-4939237 Neighboring gene nudix hydrolase 16 like 1 Neighboring gene predicted gene, 16861

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
UBA-like domain-containing protein 1
Names
family with sequence similarity 100, member A
protein FAM100A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_145359.2NP_663334.1  UBA-like domain-containing protein 1

    See identical proteins and their annotated locations for NP_663334.1

    Status: VALIDATED

    Source sequence(s)
    AC167018, AI842624, BC064081
    Consensus CDS
    CCDS49750.1
    UniProtKB/Swiss-Prot
    Q0P6G5, Q6P3B2
    Related
    ENSMUSP00000037809.7, ENSMUST00000037843.7
    Conserved Domains (1) summary
    cd14343
    Location:1048
    UBA_F100B_like; UBA-like domain found in protein FAM100B

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    4692641..4698190 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030249015.2XP_030104875.1  UBA-like domain-containing protein 1 isoform X1

  2. XM_030249016.2XP_030104876.1  UBA-like domain-containing protein 1 isoform X1