Format

Send to:

Choose Destination

UBALD1 UBA like domain containing 1 [ Homo sapiens (human) ]

Gene ID: 124402, updated on 1-Aug-2020

Summary

Official Symbol
UBALD1provided by HGNC
Official Full Name
UBA like domain containing 1provided by HGNC
Primary source
HGNC:HGNC:29576
See related
Ensembl:ENSG00000153443
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAM100A; PP11303
Expression
Ubiquitous expression in kidney (RPKM 10.6), liver (RPKM 8.5) and 25 other tissues See more
Orthologs

Genomic context

See UBALD1 in Genome Data Viewer
Location:
16p13.3
Exon count:
3
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 16 NC_000016.10 (4608884..4614888, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (4658884..4664927, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene cell death inducing p53 target 1 Neighboring gene chromosome 16 open reading frame 96 Neighboring gene SUB1 pseudogene 3 Neighboring gene Sharpr-MPRA regulatory region 9899 Neighboring gene RNA, 7SL, cytoplasmic 850, pseudogene Neighboring gene mahogunin ring finger 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ31223, FLJ32185

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

General protein information

Preferred Names
UBA-like domain-containing protein 1
Names
family with sequence similarity 100, member A
protein FAM100A

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001330467.2NP_001317396.1  UBA-like domain-containing protein 1 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame 3' terminal exon compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
    Source sequence(s)
    AC023830
    Consensus CDS
    CCDS81944.1
    UniProtKB/Swiss-Prot
    Q8TB05
    UniProtKB/TrEMBL
    K7EM88
    Related
    ENSP00000466404.1, ENST00000587615.1
    Conserved Domains (1) summary
    cd14343
    Location:1048
    UBA_F100B_like; UBA-like domain found in protein FAM100B
  2. NM_145253.3NP_660296.1  UBA-like domain-containing protein 1 isoform 1

    See identical proteins and their annotated locations for NP_660296.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1).
    Source sequence(s)
    AC023830
    Consensus CDS
    CCDS10518.1
    UniProtKB/Swiss-Prot
    Q8TB05
    Related
    ENSP00000283474.6, ENST00000283474.12
    Conserved Domains (2) summary
    cd14343
    Location:1048
    UBA_F100B_like; UBA-like domain found in protein FAM100B
    cl26464
    Location:64176
    Atrophin-1; Atrophin-1 family

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20200522

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p13 Primary Assembly

    Range
    4608884..4614888 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center