U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Bptf bromodomain PHD finger transcription factor [ Mus musculus (house mouse) ]

Gene ID: 207165, updated on 12-May-2024

Summary

Official Symbol
Bptfprovided by MGI
Official Full Name
bromodomain PHD finger transcription factorprovided by MGI
Primary source
MGI:MGI:2444008
See related
Ensembl:ENSMUSG00000040481 AllianceGenome:MGI:2444008
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Falz; 9430093H17Rik
Summary
Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and methylated histone binding activity. Predicted to contribute to ATP-dependent activity, acting on DNA. Acts upstream of or within anterior/posterior pattern specification; embryonic placenta development; and endoderm development. Predicted to be located in chromatin and nucleoplasm. Predicted to be part of NURF complex. Is expressed in several structures, including central nervous system; early conceptus; genitourinary system; and retina. Orthologous to human BPTF (bromodomain PHD finger transcription factor). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in thymus adult (RPKM 10.4), CNS E11.5 (RPKM 10.0) and 28 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Bptf in Genome Data Viewer
Location:
11 E1; 11 70.11 cM
Exon count:
32
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (106923907..107022982, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (107033081..107132147, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E4007 Neighboring gene STARR-seq mESC enhancer starr_30953 Neighboring gene RIKEN cDNA 1810010H24 gene Neighboring gene nuclear encoded tRNA arginine 1 (anticodon CCG) Neighboring gene STARR-positive B cell enhancer ABC_E9377 Neighboring gene STARR-positive B cell enhancer mm9_chr11:106905708-106906009 Neighboring gene STARR-positive B cell enhancer ABC_E2373 Neighboring gene STARR-positive B cell enhancer ABC_E5290 Neighboring gene STARR-positive B cell enhancer ABC_E10725 Neighboring gene STARR-seq mESC enhancer starr_30956 Neighboring gene STARR-positive B cell enhancer ABC_E10726 Neighboring gene STARR-seq mESC enhancer starr_30959 Neighboring gene STARR-seq mESC enhancer starr_30962 Neighboring gene predicted gene 11715 Neighboring gene nucleolar protein 11 Neighboring gene ribosomal protein S2 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • MGC54978

Gene Ontology Provided by MGI

Function Evidence Code Pubs
contributes_to ATP-dependent activity, acting on DNA ISO
Inferred from Sequence Orthology
more info
 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables methylated histone binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
 
enables transcription factor binding ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
part_of ATPase complex ISO
Inferred from Sequence Orthology
more info
 
part_of NURF complex IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of NURF complex ISO
Inferred from Sequence Orthology
more info
 
located_in cell body ISO
Inferred from Sequence Orthology
more info
 
part_of chromatin ISO
Inferred from Sequence Orthology
more info
 
located_in dendrite ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus NAS
Non-traceable Author Statement
more info
PubMed 
located_in perinuclear region of cytoplasm ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
nucleosome-remodeling factor subunit BPTF
Names
fetal Alzheimer antigen

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001359590.2NP_001346519.1  nucleosome-remodeling factor subunit BPTF isoform 3

    Status: VALIDATED

    Source sequence(s)
    AL596116
    UniProtKB/TrEMBL
    E5D6T0
    Conserved Domains (8) summary
    cd05509
    Location:26732773
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    smart00571
    Location:252311
    DDT; domain in different transcription and chromosome remodeling factors
    cd15559
    Location:404446
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:26112657
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam09606
    Location:19652386
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam15612
    Location:356393
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam15613
    Location:468536
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    cl25742
    Location:24062528
    ERM; Ezrin/radixin/moesin family
  2. NM_176850.3NP_789820.2  nucleosome-remodeling factor subunit BPTF isoform 2

    Status: VALIDATED

    Source sequence(s)
    AL596116
    Consensus CDS
    CCDS48964.1
    UniProtKB/TrEMBL
    A2A655, E9Q6A7
    Related
    ENSMUSP00000052303.9, ENSMUST00000057892.15
    Conserved Domains (6) summary
    cd05509
    Location:28062906
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    cd15559
    Location:404446
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:27442790
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam02791
    Location:253309
    DDT; DDT domain
    pfam03955
    Location:20802169
    Adeno_PIX; Adenovirus hexon-associated protein (IX)
    pfam15612
    Location:351400
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    106923907..107022982 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006532690.3XP_006532753.1  nucleosome-remodeling factor subunit BPTF isoform X23

    UniProtKB/TrEMBL
    A2A654
    Conserved Domains (9) summary
    cd05509
    Location:27982898
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    COG5271
    Location:578749
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    cd15559
    Location:404446
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:27362782
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam02791
    Location:253309
    DDT; DDT domain
    pfam03157
    Location:21402518
    Glutenin_hmw; High molecular weight glutenin subunit
    pfam13868
    Location:25312653
    TPH; Trichohyalin-plectin-homology domain
    pfam15612
    Location:356393
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam15613
    Location:468536
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
  2. XM_036156484.1XP_036012377.1  nucleosome-remodeling factor subunit BPTF isoform X20

    UniProtKB/TrEMBL
    A2A654
    Conserved Domains (9) summary
    cd05509
    Location:28562956
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    smart00571
    Location:252311
    DDT; domain in different transcription and chromosome remodeling factors
    cd15559
    Location:404446
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:27942840
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam03157
    Location:21402518
    Glutenin_hmw; High molecular weight glutenin subunit
    pfam13868
    Location:25312656
    TPH; Trichohyalin-plectin-homology domain
    pfam15612
    Location:356393
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam15613
    Location:468536
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    NF033845
    Location:579752
    MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB
  3. XM_006532686.4XP_006532749.1  nucleosome-remodeling factor subunit BPTF isoform X12

    UniProtKB/TrEMBL
    A2A654
    Related
    ENSMUSP00000102374.2, ENSMUST00000106763.8
    Conserved Domains (9) summary
    cd05509
    Location:29313031
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    COG5271
    Location:578749
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    cd15559
    Location:404446
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:28692915
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam09606
    Location:21922555
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam02791
    Location:253309
    DDT; DDT domain
    pfam13868
    Location:26422782
    TPH; Trichohyalin-plectin-homology domain
    pfam15612
    Location:356393
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam15613
    Location:468536
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
  4. XM_017314399.3XP_017169888.1  nucleosome-remodeling factor subunit BPTF isoform X19

    UniProtKB/TrEMBL
    A2A654
    Conserved Domains (10) summary
    cd05509
    Location:28522952
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    COG5271
    Location:578749
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    cd15559
    Location:404446
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:27902836
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam02791
    Location:253309
    DDT; DDT domain
    pfam03157
    Location:21942572
    Glutenin_hmw; High molecular weight glutenin subunit
    pfam13868
    Location:25852707
    TPH; Trichohyalin-plectin-homology domain
    pfam15612
    Location:356393
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam15613
    Location:468536
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    pfam17823
    Location:20382345
    DUF5585; Family of unknown function (DUF5585)
  5. XM_030245733.2XP_030101593.1  nucleosome-remodeling factor subunit BPTF isoform X16

    UniProtKB/TrEMBL
    A2A654
    Conserved Domains (10) summary
    cd05509
    Location:29103010
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    COG5271
    Location:578749
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    cd15559
    Location:404446
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:28482894
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam02791
    Location:253309
    DDT; DDT domain
    pfam03157
    Location:21942572
    Glutenin_hmw; High molecular weight glutenin subunit
    pfam13868
    Location:25852707
    TPH; Trichohyalin-plectin-homology domain
    pfam15612
    Location:356393
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam15613
    Location:468536
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    pfam17823
    Location:20382345
    DUF5585; Family of unknown function (DUF5585)
  6. XM_006532685.2XP_006532748.1  nucleosome-remodeling factor subunit BPTF isoform X11

    UniProtKB/TrEMBL
    A2A654
    Conserved Domains (10) summary
    COG5271
    Location:578749
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    cd15559
    Location:404446
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:29232969
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam09606
    Location:22462609
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam02791
    Location:253309
    DDT; DDT domain
    pfam13868
    Location:26962836
    TPH; Trichohyalin-plectin-homology domain
    pfam15612
    Location:356393
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam15613
    Location:468536
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    pfam17823
    Location:20382345
    DUF5585; Family of unknown function (DUF5585)
    cl02556
    Location:29853030
    Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
  7. XM_006532680.2XP_006532743.1  nucleosome-remodeling factor subunit BPTF isoform X6

    UniProtKB/TrEMBL
    A2A654
    Conserved Domains (10) summary
    cd05509
    Location:29853085
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    COG5271
    Location:578749
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    cd15559
    Location:404446
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:29232969
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam09606
    Location:22462609
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam02791
    Location:253309
    DDT; DDT domain
    pfam13868
    Location:26962836
    TPH; Trichohyalin-plectin-homology domain
    pfam15612
    Location:356393
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam15613
    Location:468536
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    pfam17823
    Location:20382345
    DUF5585; Family of unknown function (DUF5585)
  8. XM_006532684.4XP_006532747.1  nucleosome-remodeling factor subunit BPTF isoform X10

    UniProtKB/TrEMBL
    A2A654
    Conserved Domains (10) summary
    cd05509
    Location:29853085
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    COG5271
    Location:578749
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    cd15559
    Location:404446
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:29232969
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam09606
    Location:22462609
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam02791
    Location:253309
    DDT; DDT domain
    pfam13868
    Location:26962836
    TPH; Trichohyalin-plectin-homology domain
    pfam15612
    Location:356393
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam15613
    Location:468536
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    pfam17823
    Location:20382345
    DUF5585; Family of unknown function (DUF5585)
  9. XM_006532678.2XP_006532741.1  nucleosome-remodeling factor subunit BPTF isoform X4

    UniProtKB/TrEMBL
    A2A654
    Conserved Domains (10) summary
    COG5271
    Location:578749
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    cd15559
    Location:404446
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:29813027
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam09606
    Location:22462609
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam02791
    Location:253309
    DDT; DDT domain
    pfam13868
    Location:26962836
    TPH; Trichohyalin-plectin-homology domain
    pfam15612
    Location:356393
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam15613
    Location:468536
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    pfam17823
    Location:20382345
    DUF5585; Family of unknown function (DUF5585)
    cl02556
    Location:30433088
    Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
  10. XM_006532675.2XP_006532738.1  nucleosome-remodeling factor subunit BPTF isoform X1

    See identical proteins and their annotated locations for XP_006532738.1

    UniProtKB/TrEMBL
    A2A654
    Conserved Domains (10) summary
    cd05509
    Location:30433143
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    COG5271
    Location:578749
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    cd15559
    Location:404446
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:29813027
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam09606
    Location:22462609
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam02791
    Location:253309
    DDT; DDT domain
    pfam13868
    Location:26962836
    TPH; Trichohyalin-plectin-homology domain
    pfam15612
    Location:356393
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam15613
    Location:468536
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    pfam17823
    Location:20382345
    DUF5585; Family of unknown function (DUF5585)
  11. XM_006532677.4XP_006532740.1  nucleosome-remodeling factor subunit BPTF isoform X3

    UniProtKB/TrEMBL
    A2A654
    Conserved Domains (10) summary
    cd05509
    Location:30433143
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    COG5271
    Location:578749
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    cd15559
    Location:404446
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:29813027
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam09606
    Location:22462609
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam02791
    Location:253309
    DDT; DDT domain
    pfam13868
    Location:26962836
    TPH; Trichohyalin-plectin-homology domain
    pfam15612
    Location:356393
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam15613
    Location:468536
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    pfam17823
    Location:20382345
    DUF5585; Family of unknown function (DUF5585)
  12. XM_006532687.3XP_006532750.1  nucleosome-remodeling factor subunit BPTF isoform X14

    UniProtKB/TrEMBL
    A2A655
    Conserved Domains (9) summary
    cd05509
    Location:29183018
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    cd15559
    Location:404446
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:28562902
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam09606
    Location:21212484
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam02791
    Location:253309
    DDT; DDT domain
    pfam13868
    Location:25712711
    TPH; Trichohyalin-plectin-homology domain
    pfam15612
    Location:356393
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam15613
    Location:468536
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    pfam17823
    Location:19132220
    DUF5585; Family of unknown function (DUF5585)
  13. XM_006532683.3XP_006532746.1  nucleosome-remodeling factor subunit BPTF isoform X9

    UniProtKB/TrEMBL
    A2A655
    Conserved Domains (10) summary
    cd05509
    Location:29793079
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    cd15559
    Location:404446
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:29172963
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam09606
    Location:21822545
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam02791
    Location:253309
    DDT; DDT domain
    pfam13868
    Location:26322772
    TPH; Trichohyalin-plectin-homology domain
    pfam15612
    Location:356393
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam15613
    Location:468536
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    pfam17823
    Location:19742281
    DUF5585; Family of unknown function (DUF5585)
    NF000535
    Location:519653
    MSCRAMM_SdrC; MSCRAMM family adhesin SdrC
  14. XM_006532682.3XP_006532745.1  nucleosome-remodeling factor subunit BPTF isoform X8

    UniProtKB/TrEMBL
    A2A655
    Conserved Domains (10) summary
    cd05509
    Location:29803080
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    cd15559
    Location:404446
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:29182964
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam09606
    Location:21832546
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam02791
    Location:253309
    DDT; DDT domain
    pfam13868
    Location:26332773
    TPH; Trichohyalin-plectin-homology domain
    pfam15612
    Location:356393
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam15613
    Location:468536
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    pfam17823
    Location:19752282
    DUF5585; Family of unknown function (DUF5585)
    NF000535
    Location:519687
    MSCRAMM_SdrC; MSCRAMM family adhesin SdrC
  15. XM_006532681.3XP_006532744.1  nucleosome-remodeling factor subunit BPTF isoform X7

    UniProtKB/TrEMBL
    A2A655
    Conserved Domains (9) summary
    cd05509
    Location:29813081
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    cd15559
    Location:404446
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:29192965
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam09606
    Location:21842547
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam02791
    Location:253309
    DDT; DDT domain
    pfam13868
    Location:26342774
    TPH; Trichohyalin-plectin-homology domain
    pfam15612
    Location:356393
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam15613
    Location:468536
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    pfam17823
    Location:19762283
    DUF5585; Family of unknown function (DUF5585)
  16. XM_006532676.3XP_006532739.1  nucleosome-remodeling factor subunit BPTF isoform X2

    UniProtKB/TrEMBL
    A2A654
    Conserved Domains (10) summary
    cd05509
    Location:30423142
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    COG5271
    Location:578748
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    cd15559
    Location:404446
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:29803026
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam09606
    Location:22452608
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam02791
    Location:253309
    DDT; DDT domain
    pfam13868
    Location:26952835
    TPH; Trichohyalin-plectin-homology domain
    pfam15612
    Location:356393
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam15613
    Location:468536
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    pfam17823
    Location:20372344
    DUF5585; Family of unknown function (DUF5585)
  17. XM_006532679.3XP_006532742.1  nucleosome-remodeling factor subunit BPTF isoform X5

    UniProtKB/TrEMBL
    A2A654
    Conserved Domains (9) summary
    cd05509
    Location:29893089
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    COG5271
    Location:578749
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    cd15559
    Location:404446
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:29272973
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam09606
    Location:21922555
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam02791
    Location:253309
    DDT; DDT domain
    pfam13868
    Location:26422782
    TPH; Trichohyalin-plectin-homology domain
    pfam15612
    Location:356393
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam15613
    Location:468536
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
  18. XM_036156488.1XP_036012381.1  nucleosome-remodeling factor subunit BPTF isoform X26

    UniProtKB/TrEMBL
    E5D6T0
    Conserved Domains (8) summary
    cd05509
    Location:27312831
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    smart00571
    Location:252311
    DDT; domain in different transcription and chromosome remodeling factors
    cd15559
    Location:404446
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:26692715
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam03157
    Location:20152393
    Glutenin_hmw; High molecular weight glutenin subunit
    pfam13868
    Location:24062531
    TPH; Trichohyalin-plectin-homology domain
    pfam15612
    Location:356393
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam15613
    Location:468536
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
  19. XM_036156486.1XP_036012379.1  nucleosome-remodeling factor subunit BPTF isoform X24

    UniProtKB/TrEMBL
    A2A654
    Conserved Domains (8) summary
    cd05509
    Location:27942894
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    smart00571
    Location:252311
    DDT; domain in different transcription and chromosome remodeling factors
    cd15559
    Location:404446
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:27322778
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam03157
    Location:20782456
    Glutenin_hmw; High molecular weight glutenin subunit
    pfam13868
    Location:24692594
    TPH; Trichohyalin-plectin-homology domain
    pfam15612
    Location:356393
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam15613
    Location:468536
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
  20. XM_006532689.3XP_006532752.1  nucleosome-remodeling factor subunit BPTF isoform X18

    UniProtKB/TrEMBL
    A2A654
    Conserved Domains (9) summary
    cd05509
    Location:28562956
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    COG5271
    Location:578749
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    cd15559
    Location:404446
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:27942840
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam02791
    Location:253309
    DDT; DDT domain
    pfam03157
    Location:21402518
    Glutenin_hmw; High molecular weight glutenin subunit
    pfam13868
    Location:25312653
    TPH; Trichohyalin-plectin-homology domain
    pfam15612
    Location:356393
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam15613
    Location:468536
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
  21. XM_006532688.3XP_006532751.1  nucleosome-remodeling factor subunit BPTF isoform X15

    UniProtKB/TrEMBL
    A2A654
    Conserved Domains (10) summary
    cd05509
    Location:29103010
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    COG5271
    Location:578749
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    cd15559
    Location:404446
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:28482894
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam02791
    Location:253309
    DDT; DDT domain
    pfam03157
    Location:21942572
    Glutenin_hmw; High molecular weight glutenin subunit
    pfam13868
    Location:25852707
    TPH; Trichohyalin-plectin-homology domain
    pfam15612
    Location:356393
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam15613
    Location:468536
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    pfam17823
    Location:20382345
    DUF5585; Family of unknown function (DUF5585)
  22. XM_030245735.2XP_030101595.1  nucleosome-remodeling factor subunit BPTF isoform X22

    UniProtKB/TrEMBL
    A2A654
    Conserved Domains (10) summary
    COG5271
    Location:578749
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    cd15559
    Location:404446
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:27902836
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam02791
    Location:253309
    DDT; DDT domain
    pfam03157
    Location:21942572
    Glutenin_hmw; High molecular weight glutenin subunit
    pfam13868
    Location:25852707
    TPH; Trichohyalin-plectin-homology domain
    pfam15612
    Location:356393
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam15613
    Location:468536
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    pfam17823
    Location:20382345
    DUF5585; Family of unknown function (DUF5585)
    cl02556
    Location:28522897
    Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
  23. XM_036156483.1XP_036012376.1  nucleosome-remodeling factor subunit BPTF isoform X17

    UniProtKB/TrEMBL
    A2A654
    Conserved Domains (9) summary
    smart00571
    Location:252311
    DDT; domain in different transcription and chromosome remodeling factors
    cd15559
    Location:404446
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:28482894
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam03157
    Location:21942572
    Glutenin_hmw; High molecular weight glutenin subunit
    pfam13868
    Location:25852710
    TPH; Trichohyalin-plectin-homology domain
    pfam15612
    Location:356393
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam15613
    Location:468536
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    NF033845
    Location:579752
    MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB
    cl02556
    Location:29102955
    Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
  24. XM_036156487.1XP_036012380.1  nucleosome-remodeling factor subunit BPTF isoform X25

    UniProtKB/TrEMBL
    A2A654
    Conserved Domains (9) summary
    cd05509
    Location:27982898
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    smart00571
    Location:252311
    DDT; domain in different transcription and chromosome remodeling factors
    cd15559
    Location:404446
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:27362782
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam03157
    Location:21402518
    Glutenin_hmw; High molecular weight glutenin subunit
    pfam13868
    Location:25312656
    TPH; Trichohyalin-plectin-homology domain
    pfam15612
    Location:356393
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam15613
    Location:468536
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    NF033845
    Location:579752
    MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB
  25. XM_036156485.1XP_036012378.1  nucleosome-remodeling factor subunit BPTF isoform X21

    UniProtKB/TrEMBL
    A2A654
    Conserved Domains (9) summary
    smart00571
    Location:252311
    DDT; domain in different transcription and chromosome remodeling factors
    COG5271
    Location:578749
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    cd15559
    Location:404446
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:27942840
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam03157
    Location:21402518
    Glutenin_hmw; High molecular weight glutenin subunit
    pfam13868
    Location:25312656
    TPH; Trichohyalin-plectin-homology domain
    pfam15612
    Location:356393
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam15613
    Location:468536
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    cl02556
    Location:28562901
    Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
  26. XM_036156482.1XP_036012375.1  nucleosome-remodeling factor subunit BPTF isoform X13

    UniProtKB/TrEMBL
    A2A654
    Conserved Domains (9) summary
    cd05509
    Location:29313031
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    smart00571
    Location:252311
    DDT; domain in different transcription and chromosome remodeling factors
    COG5271
    Location:578749
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    cd15559
    Location:404446
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:28692915
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam03157
    Location:21402518
    Glutenin_hmw; High molecular weight glutenin subunit
    pfam13868
    Location:26432789
    TPH; Trichohyalin-plectin-homology domain
    pfam15612
    Location:356393
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam15613
    Location:468536
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001080832.1: Suppressed sequence

    Description
    NM_001080832.1: This RefSeq was temporarily suppressed because currently there is not sufficient data to support this transcript.