U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

OSTCP1 oligosaccharyltransferase complex subunit pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 202459, updated on 13-May-2022

Summary

Official Symbol
OSTCP1provided by HGNC
Official Full Name
oligosaccharyltransferase complex subunit pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:30530
See related
Ensembl:ENSG00000243775 AllianceGenome:HGNC:30530
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
DC2L; OSTCL
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See OSTCP1 in Genome Data Viewer
Location:
6q25.3
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (158841117..158857632, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (160086575..160103065, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (159262149..159278664, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene synaptotagmin like 3 Neighboring gene microRNA 3918 Neighboring gene ezrin Neighboring gene EZR antisense RNA 1 Neighboring gene uncharacterized LOC124901448 Neighboring gene long intergenic non-protein coding RNA 2901 Neighboring gene YKT6 v-SNARE homolog (S. cerevisiae) pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_028496.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL589931, BC024224
    Related
    ENST00000522287.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    158841117..158857632 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    160086575..160103065 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_145303.3: Suppressed sequence

    Description
    NM_145303.3: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.