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Rps3a1 ribosomal protein S3A1 [ Mus musculus (house mouse) ]

Gene ID: 20091, updated on 12-Aug-2019

Summary

Official Symbol
Rps3a1provided by MGI
Official Full Name
ribosomal protein S3A1provided by MGI
Primary source
MGI:MGI:1202063
See related
Ensembl:ENSMUSG00000028081
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rps3a
Expression
Broad expression in CNS E11.5 (RPKM 670.7), bladder adult (RPKM 656.5) and 23 other tissues See more
Orthologs

Genomic context

See Rps3a1 in Genome Data Viewer
Location:
3; 3 F1
Exon count:
6
Annotation release Status Assembly Chr Location
108 current GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (86137940..86142668, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (85941862..85946590, complement)

Chromosome 3 - NC_000069.6Genomic Context describing neighboring genes Neighboring gene SH3 domain protein D19 Neighboring gene protease, serine 48 Neighboring gene small nucleolar RNA SNORA32 Neighboring gene small nucleolar RNA, C/D box U73A Neighboring gene U6 spliceosomal RNA Neighboring gene U73B small nuclear RNA Neighboring gene small nucleolar RNA SNORA17 Neighboring gene LPS-responsive beige-like anchor

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC102469, MGC117914

Gene Ontology Provided by MGI

Function Evidence Code Pubs
mRNA binding ISO
Inferred from Sequence Orthology
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 
translation initiation factor binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
cell differentiation IEA
Inferred from Electronic Annotation
more info
 
positive regulation of fibroblast proliferation ISO
Inferred from Sequence Orthology
more info
 
positive regulation of translation ISO
Inferred from Sequence Orthology
more info
 
translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytosol IDA
Inferred from Direct Assay
more info
PubMed 
cytosolic small ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 
intracellular IEA
Inferred from Electronic Annotation
more info
 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus ISO
Inferred from Sequence Orthology
more info
 
ribonucleoprotein complex ISO
Inferred from Sequence Orthology
more info
PubMed 
ribosome IEA
Inferred from Electronic Annotation
more info
 
small ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 
synapse EXP
Inferred from Experiment
more info
PubMed 
synapse IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
40S ribosomal protein S3a
Names
ribosomal protein S3A
NP_058655.3

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_016959.4NP_058655.3  40S ribosomal protein S3a

    See identical proteins and their annotated locations for NP_058655.3

    Status: VALIDATED

    Source sequence(s)
    AI845448, AK167562, AL118161
    Consensus CDS
    CCDS17446.1
    UniProtKB/Swiss-Prot
    P97351
    UniProtKB/TrEMBL
    Q564F3
    Related
    ENSMUSP00000029722.6, ENSMUST00000029722.6
    Conserved Domains (1) summary
    pfam01015
    Location:21221
    Ribosomal_S3Ae; Ribosomal S3Ae family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p6 C57BL/6J

Genomic

  1. NC_000069.6 Reference GRCm38.p6 C57BL/6J

    Range
    86137940..86142668 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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