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Rpl21 ribosomal protein L21 [ Mus musculus (house mouse) ]

Gene ID: 19933, updated on 9-Sep-2018

Summary

Official Symbol
Rpl21provided by MGI
Official Full Name
ribosomal protein L21provided by MGI
Primary source
MGI:MGI:1278340
See related
Ensembl:ENSMUSG00000041453 Vega:OTTMUSG00000024591
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
L21; 8430440E03Rik
Expression
Broad expression in CNS E11.5 (RPKM 66.0), bladder adult (RPKM 43.1) and 23 other tissues See more
Orthologs

Genomic context

See Rpl21 in Genome Data Viewer
Location:
5; 5 G3
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (146832890..146837032)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (147644466..147648608)

Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene ubiquitin specific peptidase 12 Neighboring gene RIKEN cDNA 1700041I07 gene Neighboring gene RAS-like, family 11, member A Neighboring gene predicted gene, 38748

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC107026, MGC107587, MGC107588, MGC107690, MGC117917

Gene Ontology Provided by MGI

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytosolic large ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytosolic large ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 
endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 
intracellular IEA
Inferred from Electronic Annotation
more info
 
ribosome ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
60S ribosomal protein L21
NP_062621.2
XP_017176235.1
XP_017176236.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_019647.6NP_062621.2  60S ribosomal protein L21

    See identical proteins and their annotated locations for NP_062621.2

    Status: VALIDATED

    Source sequence(s)
    AK008457, AK018480, BQ031254, BY264537
    Consensus CDS
    CCDS19872.1
    UniProtKB/TrEMBL
    Q9CQM8
    Related
    ENSMUSP00000041652.5, OTTMUSP00000029468, ENSMUST00000035983.11, OTTMUST00000060416
    Conserved Domains (1) summary
    PTZ00189
    Location:1160
    PTZ00189; 60S ribosomal protein L21; Provisional

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

    Range
    146832890..146837032
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017320746.1XP_017176235.1  60S ribosomal protein L21 isoform X1

  2. XM_017320747.1XP_017176236.1  60S ribosomal protein L21 isoform X1

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