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Ptprcap protein tyrosine phosphatase, receptor type, C polypeptide-associated protein [ Mus musculus (house mouse) ]

Gene ID: 19265, updated on 22-Apr-2017
Official Symbol
Ptprcapprovided by MGI
Official Full Name
protein tyrosine phosphatase, receptor type, C polypeptide-associated proteinprovided by MGI
Primary source
MGI:MGI:97811
See related
Ensembl:ENSMUSG00000045826 Vega:OTTMUSG00000028312
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
LPAP; LSM-1; AI605264; CD-45-AP
Orthologs
Location:
19 A; 19 3.86 cM
Exon count:
2
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 19 NC_000085.6 (4154646..4156710)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (4154646..4156710)

Chromosome 19 - NC_000085.6Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor 152 Neighboring gene coronin, actin binding protein 1B Neighboring gene ribosomal protein S6 kinase, polypeptide 2 Neighboring gene carnosine synthase 1 Neighboring gene uncharacterized LOC102631780

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Markers

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
defense response IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
plasma membrane ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
protein tyrosine phosphatase receptor type C-associated protein
Names
CD45-AP
CD45-associated protein
PTPRC-associated protein

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_016933.3NP_058629.2  protein tyrosine phosphatase receptor type C-associated protein precursor

    See identical proteins and their annotated locations for NP_058629.2

    Status: VALIDATED

    Source sequence(s)
    AA265746, AI323196, AI627045, AW049152, BB840651
    Consensus CDS
    CCDS37884.1
    UniProtKB/Swiss-Prot
    Q64697
    UniProtKB/TrEMBL
    Q542J3
    Related
    ENSMUSP00000053412.8, OTTMUSP00000035732, ENSMUST00000061086.8, OTTMUST00000070174
    Conserved Domains (1) summary
    pfam15713
    Location:58197
    PTPRCAP; Protein tyrosine phosphatase receptor type C-associated

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000085.6 Reference GRCm38.p4 C57BL/6J

    Range
    4154646..4156710
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCm38.p4 PATCHES

Genomic

  1. NW_004058054.1 Reference GRCm38.p4 PATCHES

    Range
    140660..142724
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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