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COCMIDRAFT_22714 uncharacterized protein [ Bipolaris oryzae ATCC 44560 ]

Gene ID: 19120309, updated on 6-Jan-2024

Summary

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Gene symbol
COCMIDRAFT_22714
Gene description
uncharacterized protein
Locus tag
COCMIDRAFT_22714
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bipolaris oryzae ATCC 44560 (strain: ATCC 44560, culture-collection: ATCC:44560)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae; Pleosporaceae; Bipolaris
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Genomic context

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Location:
chromosome: Unknown
Exon count:
2

NW_006911287.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006911287.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative genome structure, secondary metabolite, and effector coding capacity across Cochliobolus pathogens. Condon BJ, et al. PLoS Genet, 2013. PMID 23357949, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables poly(A)-specific ribonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCR4-NOT complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_006911287.1 Reference assembly

    Range
    217127..219464
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007685555.1 → XP_007683745.1  uncharacterized protein COCMIDRAFT_22714 [Bipolaris oryzae ATCC 44560]

    See identical proteins and their annotated locations for XP_007683745.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    W7A0Z7
    Conserved Domains (4) summary
    cd09097
    Location:387 → 736
    Deadenylase_CCR4; C-terminal deadenylase domain of CCR4 and related domains
    sd00031
    Location:234 → 255
    LRR_1; leucine-rich repeat [structural motif]
    pfam12799
    Location:278 → 316
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:256 → 312
    LRR_8; Leucine rich repeat
Nucleotide Protein
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