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PHACADRAFT_205278 hypothetical protein [ Phanerochaete carnosa HHB-10118-sp ]

Gene ID: 18912346, updated on 14-Dec-2023

Summary

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Gene symbol
PHACADRAFT_205278
Gene description
hypothetical protein
Locus tag
PHACADRAFT_205278
Gene type
protein coding
RNA name
uncharacterized protein
RefSeq status
PROVISIONAL
Organism
Phanerochaete carnosa HHB-10118-sp (strain: HHB-10118-sp)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Polyporales; Phanerochaetaceae; Phanerochaete
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Genomic context

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Location:
chromosome: Unknown
Exon count:
8

NW_006767629.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006767629.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize. Suzuki H, et al. BMC Genomics, 2012 Sep 2. PMID 22937793, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin conjugating enzyme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_006767629.1 Reference assembly

    Range
    1254292..1260277 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007391612.1 → XP_007391674.1  uncharacterized protein PHACADRAFT_205278 [Phanerochaete carnosa HHB-10118-sp]

    See identical proteins and their annotated locations for XP_007391674.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    K5V8G4
    Conserved Domains (2) summary
    cd00162
    Location:412 → 460
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    pfam01485
    Location:567 → 602
    IBR; IBR domain, a half RING-finger domain
Protein Accession Links
GenPept Link UniProtKB Link
EKM59101.1

Gene LinkOut

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Molecular Biology Databases