U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

T05C3.2 NACHT domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 188117, updated on 24-Apr-2022

Summary

Go to the top of the page Help
Gene symbol
T05C3.2
Gene description
NACHT domain-containing protein
Primary source
WormBase:WBGene00020254
Locus tag
CELE_T05C3.2
See related
AllianceGenome:WB:WBGene00020254
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Orthologous to several human genes including NWD2 (NACHT and WD repeat domain containing 2). [provided by Alliance of Genome Resources, Apr 2022]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See T05C3.2 in Genome Data Viewer
Location:
chromosome: V
Exon count:
26
Sequence:
Chromosome: V; NC_003283.11 (5493747..5503010)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Ground-like domain-containing protein Neighboring gene Carb-bd_dom_fam9 domain-containing protein;PLD phosphodiesterase domain-containing protein Neighboring gene DNaJ domain (prokaryotic heat shock protein) Neighboring gene ncRNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Markers

Homology

General protein information

Go to the top of the page Help
Preferred Names
NACHT domain-containing protein
NP_504451.3
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    5493747..5503010
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_072050.3 → NP_504451.3  NACHT domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_504451.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    O16302
    Conserved Domains (6) summary
    smart00382
    Location:459 → 574
    AAA; ATPases associated with a variety of cellular activities
    COG2319
    Location:1303 → 1712
    WD40; WD40 repeat [General function prediction only]
    pfam05729
    Location:459 → 633
    NACHT; NACHT domain
    pfam13271
    Location:115 → 201
    DUF4062; Domain of unknown function (DUF4062)
    sd00039
    Location:1296 → 1332
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:1326 → 1712
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools