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Peg3 paternally expressed 3 [ Mus musculus (house mouse) ]

Gene ID: 18616, updated on 26-Nov-2019

Summary

Official Symbol
Peg3provided by MGI
Official Full Name
paternally expressed 3provided by MGI
Primary source
MGI:MGI:104748
See related
Ensembl:ENSMUSG00000002265
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Pw1; End4; ASF-1; Gcap4; Zfp102; AL022617; mKIAA0287
Expression
Biased expression in placenta adult (RPKM 77.8), limb E14.5 (RPKM 49.2) and 12 other tissues See more
Orthologs

Genomic context

See Peg3 in Genome Data Viewer
Location:
7 A1; 7 3.89 cM
Exon count:
12
Annotation release Status Assembly Chr Location
108 current GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (6703892..6730462, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (6658671..6683130, complement)

Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene zinc finger, imprinted 2 Neighboring gene zinc finger, imprinted 1 Neighboring gene Peg3 opposite strand Neighboring gene ubiquitin specific peptidase 29 Neighboring gene Tctex1 domain containing 2 pseudogene Neighboring gene microRNA 3099

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
apoptotic process IEA
Inferred from Electronic Annotation
more info
 
negative regulation of transcription by RNA polymerase II IMP
Inferred from Mutant Phenotype
more info
PubMed 
NOT negative regulation of transcription by RNA polymerase II IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of transcription by RNA polymerase II IGI
Inferred from Genetic Interaction
more info
PubMed 
regulation of gene expression IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
autophagosome IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
paternally-expressed gene 3 protein
Names
granule cell antiserum positive 4
paternally expressed gene 3

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_008817.2NP_032843.2  paternally-expressed gene 3 protein

    See identical proteins and their annotated locations for NP_032843.2

    Status: VALIDATED

    Source sequence(s)
    AB003040, AK044602, CAAA01104351
    Consensus CDS
    CCDS20783.1
    UniProtKB/Swiss-Prot
    Q3URU2
    Related
    ENSMUSP00000050750.4, ENSMUST00000051209.10
    Conserved Domains (3) summary
    PHA03169
    Location:8621080
    PHA03169; hypothetical protein; Provisional
    sd00017
    Location:327347
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:11471169
    zf-C2H2; Zinc finger, C2H2 type

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p6 C57BL/6J

Genomic

  1. NC_000073.6 Reference GRCm38.p6 C57BL/6J

    Range
    6703892..6730462 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017322031.2XP_017177520.1  paternally-expressed gene 3 protein isoform X3

    UniProtKB/Swiss-Prot
    Q3URU2
    Related
    ENSMUSP00000159154.1, ENSMUST00000239104.1
    Conserved Domains (3) summary
    PHA03169
    Location:8621080
    PHA03169; hypothetical protein; Provisional
    sd00017
    Location:327347
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:11471169
    zf-C2H2; Zinc finger, C2H2 type
  2. XM_017322033.2XP_017177522.1  paternally-expressed gene 3 protein isoform X4

  3. XM_017322030.2XP_017177519.1  paternally-expressed gene 3 protein isoform X2

  4. XM_017322029.2XP_017177518.1  paternally-expressed gene 3 protein isoform X1

  5. XM_030242211.1XP_030098071.1  paternally-expressed gene 3 protein isoform X3

  6. XM_030242213.1XP_030098073.1  paternally-expressed gene 3 protein isoform X4

  7. XM_030242212.1XP_030098072.1  paternally-expressed gene 3 protein isoform X3

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