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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001048168.2 → NP_001041633.1 nuclear transcription factor Y subunit gamma isoform 1
See identical proteins and their annotated locations for NP_001041633.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1, 2, 4, 5 and 6 encode the same isoform (1).
- Source sequence(s)
-
AB006181, AK011327, BC053723, BE647422, DV650959
- Consensus CDS
-
CCDS18594.1
- UniProtKB/Swiss-Prot
- P70353, Q6GU21
- UniProtKB/TrEMBL
- A0A6P5PKB1, A0A8C6GV15, Q7TPS7
- Related
- ENSMUSP00000112610.2, ENSMUST00000118902.8
- Conserved Domains (1) summary
-
- COG5208
Location:17 → 123
- HAP5; CCAAT-binding factor, subunit C [Transcription]
-
NM_001277095.1 → NP_001264024.1 nuclear transcription factor Y subunit gamma isoform 2
See identical proteins and their annotated locations for NP_001264024.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) lacks an alternate in-frame exon, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
- Source sequence(s)
-
AB006181, AK011327, AL606904, BE647422
- UniProtKB/Swiss-Prot
-
P70353
- UniProtKB/TrEMBL
-
Q3U114
- Conserved Domains (1) summary
-
- cl23735
Location:42 → 60
- H4; Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in ...
-
NM_001357192.1 → NP_001344121.1 nuclear transcription factor Y subunit gamma isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR, compared to variant 1. Variants 1, 2, 4, 5 and 6 encode the same isoform (1).
- Source sequence(s)
-
AB006181, AK011327, AL606904, BE647422
- Consensus CDS
-
CCDS18594.1
- UniProtKB/Swiss-Prot
-
Q6GU21
- UniProtKB/TrEMBL
- A0A6P5PKB1, A0A8C6GV15
- Related
- ENSMUSP00000112810.2, ENSMUST00000120779.8
- Conserved Domains (1) summary
-
- COG5208
Location:17 → 123
- HAP5; CCAAT-binding factor, subunit C [Transcription]
-
NM_001357193.1 → NP_001344122.1 nuclear transcription factor Y subunit gamma isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) differs in the 5' UTR, compared to variant 1. Variants 1, 2, 4, 5 and 6 encode the same isoform (1).
- Source sequence(s)
-
AB006181, AK011327, AL606904, BE647422, BY005484
- Consensus CDS
-
CCDS18594.1
- UniProtKB/Swiss-Prot
-
Q6GU21
- UniProtKB/TrEMBL
- A0A6P5PKB1, A0A8C6GV15
- Conserved Domains (1) summary
-
- COG5208
Location:17 → 123
- HAP5; CCAAT-binding factor, subunit C [Transcription]
-
NM_001357194.1 → NP_001344123.1 nuclear transcription factor Y subunit gamma isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (6) differs in the 5' UTR, compared to variant 1. Variants 1, 2, 4, 5 and 6 encode the same isoform (1).
- Source sequence(s)
-
AB006181, AK011327, AL606904, BE647422, BY005484
- Consensus CDS
-
CCDS18594.1
- UniProtKB/Swiss-Prot
-
Q6GU21
- UniProtKB/TrEMBL
- A0A6P5PKB1, A0A8C6GV15
- Conserved Domains (1) summary
-
- COG5208
Location:17 → 123
- HAP5; CCAAT-binding factor, subunit C [Transcription]
-
NM_008692.4 → NP_032718.2 nuclear transcription factor Y subunit gamma isoform 1
See identical proteins and their annotated locations for NP_032718.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the llonger isoform (1). Variants 1, 2, 4, 5 and 6 encode the same isoform (1).
- Source sequence(s)
-
AB006181, AK011327, AL606904, BE647422
- Consensus CDS
-
CCDS18594.1
- UniProtKB/Swiss-Prot
- P70353, Q6GU21
- UniProtKB/TrEMBL
- A0A6P5PKB1, A0A8C6GV15
- Related
- ENSMUSP00000047441.6, ENSMUST00000043429.12
- Conserved Domains (1) summary
-
- COG5208
Location:17 → 123
- HAP5; CCAAT-binding factor, subunit C [Transcription]
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000070.7 Reference GRCm39 C57BL/6J
- Range
-
120614632..120688776 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006502851.5 → XP_006502914.1 nuclear transcription factor Y subunit gamma isoform X4
- Conserved Domains (1) summary
-
- COG5208
Location:23 → 61
- HAP5; CCAAT-binding factor, subunit C [Transcription]
-
XM_006502849.5 → XP_006502912.1 nuclear transcription factor Y subunit gamma isoform X2
- UniProtKB/TrEMBL
- A0A6P7QY92, A0A8C6GV52
- Conserved Domains (1) summary
-
- COG5208
Location:36 → 99
- HAP5; CCAAT-binding factor, subunit C [Transcription]
-
XM_030253306.2 → XP_030109166.1 nuclear transcription factor Y subunit gamma isoform X3
- Conserved Domains (1) summary
-
- COG5208
Location:17 → 98
- HAP5; CCAAT-binding factor, subunit C [Transcription]
-
XM_036163816.1 → XP_036019709.1 nuclear transcription factor Y subunit gamma isoform X2
- UniProtKB/TrEMBL
- A0A6P7QY92, A0A8C6GV52
- Conserved Domains (1) summary
-
- COG5208
Location:36 → 99
- HAP5; CCAAT-binding factor, subunit C [Transcription]
-
XM_030253305.2 → XP_030109165.1 nuclear transcription factor Y subunit gamma isoform X1
- UniProtKB/Swiss-Prot
-
Q6GU21
- UniProtKB/TrEMBL
- A0A6P5PKB1, A0A8C6GV15
- Conserved Domains (1) summary
-
- COG5208
Location:17 → 123
- HAP5; CCAAT-binding factor, subunit C [Transcription]
-
XM_030253307.1 → XP_030109167.1 nuclear transcription factor Y subunit gamma isoform X4
- Conserved Domains (1) summary
-
- COG5208
Location:23 → 61
- HAP5; CCAAT-binding factor, subunit C [Transcription]
-
XM_036163814.1 → XP_036019707.1 nuclear transcription factor Y subunit gamma isoform X1
- UniProtKB/Swiss-Prot
-
Q6GU21
- UniProtKB/TrEMBL
- A0A6P5PKB1, A0A8C6GV15
- Related
- ENSMUSP00000095516.6, ENSMUST00000097906.12
- Conserved Domains (1) summary
-
- COG5208
Location:17 → 123
- HAP5; CCAAT-binding factor, subunit C [Transcription]
RNA
-
XR_003954890.2 RNA Sequence
-
XR_003954891.2 RNA Sequence
-
XR_004941831.1 RNA Sequence