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Naca nascent polypeptide-associated complex alpha polypeptide [ Mus musculus (house mouse) ]

Gene ID: 17938, updated on 12-May-2024

Summary

Official Symbol
Nacaprovided by MGI
Official Full Name
nascent polypeptide-associated complex alpha polypeptideprovided by MGI
Primary source
MGI:MGI:106095
See related
Ensembl:ENSMUSG00000061315 AllianceGenome:MGI:106095
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
skNAC; Gm1878; mKIAA0363
Summary
Enables TBP-class protein binding activity and transcription coactivator activity. Involved in several processes, including heart development; negative regulation of striated muscle cell apoptotic process; and positive regulation of skeletal muscle tissue growth. Acts upstream of or within myoblast migration. Located in cytoplasm and nucleus. Is expressed in several structures, including aorta; genitourinary system; gut; liver; and spleen. Orthologous to human NACA (nascent polypeptide associated complex subunit alpha). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in heart adult (RPKM 34.3), CNS E11.5 (RPKM 24.7) and 28 other tissues See more
Orthologs
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Genomic context

See Naca in Genome Data Viewer
Location:
10 D3; 10 76.39 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (127869144..127884506)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (128035346..128048637)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E9812 Neighboring gene small nuclear ribonucleoprotein D2 pseudogene Neighboring gene DNA primase, p49 subunit Neighboring gene STARR-seq mESC enhancer starr_28254 Neighboring gene STARR-positive B cell enhancer ABC_E5198 Neighboring gene STARR-positive B cell enhancer ABC_E10658 Neighboring gene prostaglandin E synthase 3 Neighboring gene predicted gene, 47438 Neighboring gene STARR-positive B cell enhancer ABC_E25 Neighboring gene small nucleolar RNA, C/D box 59A Neighboring gene ATP synthase F1 subunit beta

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 
  • Targeted (3)  1 citation

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables TBP-class protein binding IDA
Inferred from Direct Assay
more info
PubMed 
enables transcription coactivator activity IDA
Inferred from Direct Assay
more info
PubMed 
enables unfolded protein binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in cardiac ventricle development IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in heart development IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in heart trabecula morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within myoblast migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in negative regulation of protein localization to endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of striated muscle cell apoptotic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in negative regulation of transcription by RNA polymerase II IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of cell proliferation involved in heart morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of skeletal muscle tissue growth IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of transcription by RNA polymerase II IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in protein targeting to membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within protein transport IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of skeletal muscle fiber development IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in skeletal muscle tissue regeneration IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in wound healing IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
part_of nascent polypeptide-associated complex ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
nascent polypeptide-associated complex subunit alpha
Names
alpha-NAC, muscle-specific form
alpha-NAC/1.9.2
nascent polypeptide-associated complex alpha subunit
nascent polypeptide-associated complex subunit alpha, muscle-specific form
NP_001106670.1
NP_001269905.1
NP_038636.2
XP_036011564.1
XP_036011565.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001113199.2NP_001106670.1  nascent polypeptide-associated complex subunit alpha isoform a

    See identical proteins and their annotated locations for NP_001106670.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (a).
    Source sequence(s)
    AC131120
    Consensus CDS
    CCDS48723.1
    UniProtKB/Swiss-Prot
    E9QMB1, P70670
    Related
    ENSMUSP00000089680.6, ENSMUST00000092048.13
    Conserved Domains (3) summary
    PHA03247
    Location:10571559
    PHA03247; large tegument protein UL36; Provisional
    cd14415
    Location:21412186
    UBA_NACA_NACP1; UBA-like domain found in nascent polypeptide-associated complex subunit alpha (NACA) and putative NACA-like protein (NACP1)
    cd22054
    Location:20562103
    NAC_NACA; nascent polypeptide-associated complex (NAC), alpha subunit
  2. NM_001282976.2NP_001269905.1  nascent polypeptide-associated complex subunit alpha isoform b

    See identical proteins and their annotated locations for NP_001269905.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) has an additional segment in the 5' UTR and lacks an in-frame large exon in the coding region, compared to variant 1. The resulting isoform (b) lacks an internal segment, compared to isoform a. Variants 2 and 3 encode the same isoform b.
    Source sequence(s)
    AC131120
    Consensus CDS
    CCDS24258.1
    UniProtKB/Swiss-Prot
    Q3THR6, Q4FZL8, Q60817
    UniProtKB/TrEMBL
    Q3UK68
    Conserved Domains (2) summary
    cd14415
    Location:169214
    UBA_NACA_NACP1; UBA-like domain found in nascent polypeptide-associated complex subunit alpha (NACA) and putative NACA-like protein (NACP1)
    cd22054
    Location:84131
    NAC_NACA; nascent polypeptide-associated complex (NAC), alpha subunit
  3. NM_013608.4NP_038636.2  nascent polypeptide-associated complex subunit alpha isoform b

    See identical proteins and their annotated locations for NP_038636.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal in-frame large exon in the coding region, compared to variant 1. The resulting isoform (b) lacks an internal segment, compared to isoform a. Variants 2 and 3 encode the same isoform b.
    Source sequence(s)
    AC131120
    Consensus CDS
    CCDS24258.1
    UniProtKB/Swiss-Prot
    Q3THR6, Q4FZL8, Q60817
    UniProtKB/TrEMBL
    Q3UK68
    Related
    ENSMUSP00000073532.8, ENSMUST00000073868.9
    Conserved Domains (2) summary
    cd14415
    Location:169214
    UBA_NACA_NACP1; UBA-like domain found in nascent polypeptide-associated complex subunit alpha (NACA) and putative NACA-like protein (NACP1)
    cd22054
    Location:84131
    NAC_NACA; nascent polypeptide-associated complex (NAC), alpha subunit

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    127869144..127884506
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036155672.1XP_036011565.1  nascent polypeptide-associated complex subunit alpha isoform X2

    UniProtKB/Swiss-Prot
    Q3THR6, Q4FZL8, Q60817
    UniProtKB/TrEMBL
    Q3UK68
    Conserved Domains (2) summary
    cd14415
    Location:169214
    UBA_NACA_NACP1; UBA-like domain found in nascent polypeptide-associated complex subunit alpha (NACA) and putative NACA-like protein (NACP1)
    cd22054
    Location:84131
    NAC_NACA; nascent polypeptide-associated complex (NAC), alpha subunit
  2. XM_036155671.1XP_036011564.1  nascent polypeptide-associated complex subunit alpha isoform X1

    UniProtKB/Swiss-Prot
    E9QMB1, P70670
    Conserved Domains (3) summary
    PHA03247
    Location:10571559
    PHA03247; large tegument protein UL36; Provisional
    cd14415
    Location:21412186
    UBA_NACA_NACP1; UBA-like domain found in nascent polypeptide-associated complex subunit alpha (NACA) and putative NACA-like protein (NACP1)
    cd22054
    Location:20562103
    NAC_NACA; nascent polypeptide-associated complex (NAC), alpha subunit