3MCB,3MCE,3LKX


Conserved Protein Domain Family
NAC_NACA

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cd22054: NAC_NACA 
nascent polypeptide-associated complex (NAC), alpha subunit
The nascent polypeptide-associated complex (NAC) is a complex, conserved from archaea to human, that plays an important role in co translational targeting of nascent polypeptides to the endoplasmic reticulum (ER). In eukaryotes, under physiological conditions, the complex is a stable heterodimer of the NAC alpha subunit and the NAC beta subunit, also known as basal transcription factor 3b (BTF3b). An imbalance of the relative concentrations has been observed in diseases, like Alzheimer's, AIDS, and ulcerative colitis. NAC alpha consists of a NAC domain, also present in BTF3, and a unique C-terminal ubiquitin-associated (UBA) domain.
Statistics
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PSSM-Id: 409233
Aligned: 67 rows
Threshold Bit Score: 38.3096
Created: 22-Jun-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
heterodimer
Conserved site includes 23 residues -Click on image for an interactive view with Cn3D
Feature 1:heterodimer interface [polypeptide binding site]
Evidence:
  • Structure:3MCB: Homo sapiens NAC alpha and beta (BTF3b) subunits form a heterodimer; contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            # ###########          #         #########    #
3MCB_A         6 GLRQVTGVTRVTIRKSKnILFVITKPDVYKSp---aSDTYIVFGEAKIEDL 53  human
XP_001314926  47 NLKELENVTTVTIRAGNqMVFSFSQPDVFYI-----DNVYIVFGENNRSDA 92  Trichomonas vaginalis G3
Q6CDH0        41 NLQKVEGITRVVLKRTRqHIFVIANPEVYKTp---tGNSYVVFGEAQHEDM 88  Yarrowia lipolytica CLIB122
XP_657202    304 GLVEVPNVIEFSLKRAG-SKFVINQPAVYKLp---sSEHYVVYGEPRNEYM 350 Entamoeba histolytica HM-1:IMSS
XP_002681116  56 GLKEYPGVKQVSIRSAQrLNLTIDDPEVFISdngngTAVFVVFGKFNMEDA 106 Naegleria gruberi strain NEG-M
KXN70535      47 DAVPLSGIQEVTLFQAGgKVLNIENPKVHGNp---aQQAYAVHGEAVEKEL 94  Conidiobolus coronatus NRRL 28638
Q9HI94        21 KSTEMDDVTKVIFKGKT-KDYVIDNAQVTMIea-qgVKTFQVVGTMREVPK 69  Thermoplasma acidophilum DSM 1728
Q97CI3        21 KSTEMDDVKKVIFVGKE-KDYVIENAQVTMIea-qgVKTFQVVGDFRETPK 69  Thermoplasma volcanium GSS1
Q8TSA1        21 DVKELKDVKEVIIKTAD-SNIVIENANVTIMtv-qgSETYQIVGDAKEVPK 69  Methanosarcina acetivorans C2A
O26279        25 DMKDLRGVEEVVIKLKR-KEIIIKNPKVNVMef-mgQKTYQVTGKARERSL 73  Methanothermobacter thermautotrophicus str. ...

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