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LOC17889010 berberine bridge enzyme-like 15 [ Capsella rubella ]

Gene ID: 17889010, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17889010
Gene description
berberine bridge enzyme-like 15
Locus tag
CARUB_v10022971mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238920.1 (9556929..9559419, complement)

NW_006238920.1Genomic Context describing neighboring genes Neighboring gene dihydroceramide fatty acyl 2-hydroxylase FAH1 Neighboring gene uncharacterized LOC17888058 Neighboring gene berberine bridge enzyme-like 16 Neighboring gene probable WRKY transcription factor 35

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238920 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables FAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
berberine bridge enzyme-like 15

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238920.1 Reference Caprub1_0

    Range
    9556929..9559419 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006293917.2 → XP_006293979.1  berberine bridge enzyme-like 15

    See identical proteins and their annotated locations for XP_006293979.1

    UniProtKB/TrEMBL
    R0FVB5
    Conserved Domains (3) summary
    COG0277
    Location:94 → 530
    GlcD; FAD/FMN-containing dehydrogenase [Energy production and conversion]
    pfam01565
    Location:82 → 221
    FAD_binding_4; FAD binding domain
    pfam08031
    Location:475 → 528
    BBE; Berberine and berberine like
Nucleotide Protein
Heading Accession and Version

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