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Taxonomy browser (Capsella rubella)

Capsella rubella

Taxonomy ID: 81985 (for references in articles please use NCBI:txid81985)
Scientific name: Capsella rubella Reut.
NCBI BLAST® name: eudicots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
   Entrez records   
Database name Direct links
Nucleotide 67,013
Protein 67,883
Genome 1
Popset 708
GEO Datasets 30
PubMed Central 530
Gene 31,042
SRA Experiments 192
Identical Protein Groups 42,065
Bio Project 20
Bio Sample 129
Bio Systems 262
Assembly 1
Probe 117
Taxonomy 1

Comments and References:

Nota BeneTROPICOS (Aug 03, 2011)
Name accessed on 3 August 2011 in: Missouri Botanical Garden, 2008 - 4344 Shaw Boulevard, Saint Louis, Missouri 63110, U.S.A. on line at:

Koch & Mummenhoff 2006
Koch M and Mummenhoff K. 2006. Evolution and Phylogeny of the Brassicaceae. Plant Systematics and Evolution 259(2-4): 81-258.

Nota BeneEuro+Med Plantbase
Name verified on date of entry into database in: The Euro+Med Plantbase - the information resource for Euro-Mediterranean plant diversity. W. Greuter (Ed.) Botanic Garden and Botanical Museum Berlin-Dahlem.

Genome Information

Go to NCBI genomic BLAST® page for Capsella rubella
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
JGI - Joint Genome Institute, U.S. Department of Energy
348,122 348,122
Totals per type
348,122 348,122

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Capsella rubella taxonomy taxonomy/phylogenetic Arctos Specimen Database
2 records from this provider supplemental materials Dryad Digital Repository
Capsella bursa-pastoris (L.) Medik. taxonomy/phylogenetic Encyclopedia of life
GOLD: Go0002788 organism-specific Genomes On Line Database
2614208513: Capsella rubella organism-specific Integrated Microbial Genomes
Capsella rubella taxonomy/phylogenetic The International Plant Names Index
Capsella rubella Reut. taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
WebScipio: Capsella rubella organism-specific WebScipio - eukaryotic gene identification
diArk: Capsella rubella organism-specific diArk - a resource for eukaryotic genome research
Capsella rubella taxonomy/phylogenetic electronic Plant Information Centre
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

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