Format

Send to:

Choose Destination

lin-42 PAS domain-containing protein;Period protein homolog lin-42 [ Caenorhabditis elegans ]

Gene ID: 173503, updated on 19-Oct-2019

Summary

Gene symbol
lin-42
Gene description
PAS domain-containing protein;Period protein homolog lin-42
Primary source
WormBase:WBGene00018572
Locus tag
CELE_F47F6.1
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Genomic context

See lin-42 in Genome Data Viewer
Location:
chromosome: II
Exon count:
11
Sequence:
Chromosome: II; NC_003280.10 (1233230..1252359, complement)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Zinc metalloproteinase nas-27 Neighboring gene Rap-GAP domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene C-type LECtin

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
RNA polymerase II transcription factor binding IPI
Inferred from Physical Interaction
more info
PubMed 
transcription corepressor binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcription factor binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcription regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
cell differentiation IEA
Inferred from Electronic Annotation
more info
 
circadian regulation of gene expression IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
entrainment of circadian clock by photoperiod IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
negative regulation of dauer larval development IEP
Inferred from Expression Pattern
more info
PubMed 
negative regulation of dauer larval development IGI
Inferred from Genetic Interaction
more info
PubMed 
negative regulation of dauer larval development IMP
Inferred from Mutant Phenotype
more info
PubMed 
negative regulation of pri-miRNA transcription by RNA polymerase II IMP
Inferred from Mutant Phenotype
more info
PubMed 
negative regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of development, heterochronic IMP
Inferred from Mutant Phenotype
more info
PubMed 
response to light stimulus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
PAS domain-containing protein;Period protein homolog lin-42
NP_001022176.1
  • Confirmed by transcript evidence
NP_001022177.1
  • Confirmed by transcript evidence
NP_001022178.1
  • Confirmed by transcript evidence
NP_001309559.1
  • Partially confirmed by transcript evidence
NP_001309560.1
  • Confirmed by transcript evidence
NP_001309561.1
  • Partially confirmed by transcript evidence
NP_001309562.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    1233230..1252359 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001322704.2NP_001309559.1  PAS domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A131MAY5
    Conserved Domains (2) summary
    cd00130
    Location:225328
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam14598
    Location:226328
    PAS_11; PAS domain
  2. NM_001322705.2NP_001309560.1  Period protein homolog lin-42 [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A131MAT8
  3. NM_001322706.2NP_001309562.1  Period protein homolog lin-42 [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A131MCB3
  4. NM_001027006.5NP_001022177.1  Period protein homolog lin-42 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001022177.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q65ZG8
    Conserved Domains (2) summary
    cd00130
    Location:168271
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam14598
    Location:169271
    PAS_11; PAS domain
  5. NM_001027005.4NP_001022176.1  Period protein homolog lin-42 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001022176.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q65ZG8
  6. NM_001322707.2NP_001309561.1  PAS domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A131MBE1
    Conserved Domains (2) summary
    cd00130
    Location:225328
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam14598
    Location:226328
    PAS_11; PAS domain
  7. NM_001027007.3NP_001022178.1  Period protein homolog lin-42 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001022178.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q65ZG8
    Conserved Domains (2) summary
    cd00130
    Location:168271
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam14598
    Location:169271
    PAS_11; PAS domain
Support Center