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Cog1 component of oligomeric golgi complex 1 [ Mus musculus (house mouse) ]

Gene ID: 16834, updated on 20-Aug-2019

Summary

Official Symbol
Cog1provided by MGI
Official Full Name
component of oligomeric golgi complex 1provided by MGI
Primary source
MGI:MGI:1333873
See related
Ensembl:ENSMUSG00000018661
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ldlb; mKIAA1381; 6030445I15
Expression
Ubiquitous expression in colon adult (RPKM 24.9), testis adult (RPKM 20.1) and 28 other tissues See more
Orthologs

Genomic context

See Cog1 in Genome Data Viewer
Location:
11; 11 E2
Exon count:
15
Annotation release Status Assembly Chr Location
108 current GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (113649178..113669331)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (113510843..113523715)

Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene solute carrier family 39 (metal ion transporter), member 11 Neighboring gene predicted gene, 51928 Neighboring gene somatostatin receptor 2 Neighboring gene family with sequence similarity 104, member A Neighboring gene DNA segment, Chr 11, Wayne State University 47, expressed Neighboring gene cleavage and polyadenylation specific factor 4-like Neighboring gene CDC42 effector protein (Rho GTPase binding) 4

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • KIAA1381

Gene Ontology Provided by MGI

Process Evidence Code Pubs
intra-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 
protein transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Golgi apparatus ISO
Inferred from Sequence Orthology
more info
 
Golgi transport complex ISO
Inferred from Sequence Orthology
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
conserved oligomeric Golgi complex subunit 1
Names
COG complex subunit 1
low density lipoprotein B
low density lipoprotein receptor defect B-complementing protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_013581.3NP_038609.3  conserved oligomeric Golgi complex subunit 1

    See identical proteins and their annotated locations for NP_038609.3

    Status: VALIDATED

    Source sequence(s)
    BC063056, BY721599
    Consensus CDS
    CCDS25599.1
    UniProtKB/Swiss-Prot
    Q9Z160
    Related
    ENSMUSP00000018805.8, ENSMUST00000018805.14
    Conserved Domains (1) summary
    pfam08700
    Location:1791
    Vps51; Vps51/Vps67

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p6 C57BL/6J

Genomic

  1. NC_000077.6 Reference GRCm38.p6 C57BL/6J

    Range
    113649178..113669331
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006532343.4XP_006532406.1  conserved oligomeric Golgi complex subunit 1 isoform X1

    Conserved Domains (1) summary
    pfam08700
    Location:39113
    Vps51; Vps51/Vps67
  2. XM_006532346.2XP_006532409.1  conserved oligomeric Golgi complex subunit 1 isoform X3

  3. XM_006532344.2XP_006532407.1  conserved oligomeric Golgi complex subunit 1 isoform X2

    See identical proteins and their annotated locations for XP_006532407.1

    Conserved Domains (1) summary
    pfam08700
    Location:39113
    Vps51; Vps51/Vps67
  4. XM_006532345.2XP_006532408.1  conserved oligomeric Golgi complex subunit 1 isoform X2

    See identical proteins and their annotated locations for XP_006532408.1

    Conserved Domains (1) summary
    pfam08700
    Location:39113
    Vps51; Vps51/Vps67

RNA

  1. XR_001779880.2 RNA Sequence

  2. XR_388357.2 RNA Sequence

  3. XR_388356.2 RNA Sequence

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